Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,758,383 – 4,758,474 |
Length | 91 |
Max. P | 0.540709 |
Location | 4,758,383 – 4,758,474 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 87.07 |
Mean single sequence MFE | -21.26 |
Consensus MFE | -15.59 |
Energy contribution | -16.55 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.04 |
Mean z-score | -1.59 |
Structure conservation index | 0.73 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4758383 91 - 20766785 GGUCACUUUAUUAAAUGGCCUUCCACGCAUCCAUGGAAAUCGGACA-------GUUCACAGCUUCCAGCUCCCAGCGAUUAUCACACACGCUCGAACA (((((.((....)).)))))(((((........)))))........-------((((..(((.....)))...((((...........)))).)))). ( -17.20) >DroSec_CAF1 38335 98 - 1 GGUCACUUUAUUAAAUGACCUUCCACGCAUCCAUGGAAGUCGACCAGCUCCCAGCUCCCAGCUUCCAGCUCCCAGCGAUUAUCACACACGCUCGAGCA (((((.((....)).))))).............(((((((.(...(((.....)))..).)))))))((((..((((...........)))).)))). ( -25.90) >DroSim_CAF1 39320 98 - 1 GGUCACUUUAUUAAAUGACCUUCCACGCAUCCAUGGAAGUCGACCACCUCCCAGCUCCCAGCUUCCAGCUCCCAGCGAUUAUCACACACGCUCGAGCA (((((.((....)).))))).............(((((((.((.(........).))...)))))))((((..((((...........)))).)))). ( -22.20) >DroEre_CAF1 37457 84 - 1 GGUCACUUUAUUAAAUGGCCUUCCACGCAUCCAUGGAAGGCGCC--------------CAGCUCCCAGCGCCCAGCGAUUAUCACACACGCUCGAGCA .................((((((((........))))))))...--------------..((((..((((....(.(.....).)...)))).)))). ( -22.30) >DroYak_CAF1 38119 91 - 1 GGUCACUUUAUUAAAUGGCCUUACACGCAUCCAUGGAAGUCGCCCA-------GCACCCAGCUCCCAGCUCCCAGCGAUUAUCACACACGCUCGAGCA (((.(((((.....((((............)))).))))).))).(-------((.....)))....((((..((((...........)))).)))). ( -18.70) >consensus GGUCACUUUAUUAAAUGGCCUUCCACGCAUCCAUGGAAGUCGACCA_______GCUCCCAGCUUCCAGCUCCCAGCGAUUAUCACACACGCUCGAGCA (((((.((....)).))))).............(((((((.(................).)))))))((((..((((...........)))).)))). (-15.59 = -16.55 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:50 2006