| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,747,549 – 4,747,653 |
| Length | 104 |
| Max. P | 0.561687 |
| Location | 4,747,549 – 4,747,653 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 81.25 |
| Mean single sequence MFE | -18.08 |
| Consensus MFE | -12.23 |
| Energy contribution | -12.85 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.561687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4747549 104 + 20766785 AAUAUCACUUAGGCAAACAAAAUUGCCAUUUAGAAGUAAUGAAAUUAUAUAGCAGAGGCAACAAUGUCUCAAUCCAUUGAAUAAAUCAUUCAAUAAUCGCUAGU ...........(((((......)))))......................((((.((((((....)))))).....(((((((.....)))))))....)))).. ( -22.20) >DroSim_CAF1 30392 97 + 1 AAUAUCACUUAGGUGCACCAAAUUGCCAUUUAAACGUAAUGAAAUUAUAUAGCAGAGGCAACAAUGUCUCAAUCCAUUGAAUAAAUCAUUUAAUAA-------U ...........(((((....((((..((((.......)))).)))).....)))((((((....))))))...))(((((((.....)))))))..-------. ( -12.90) >DroEre_CAF1 26666 97 + 1 -------CUCAGGCUCACAAAAUUGCCAUUUAAAUCUAAUGAAAUUGUGUAGCAGAGGCAACAAUGUCUCAAUCCUUUGAAUAAAUCAUUCAAUAAUCGCUAGU -------....(((..........)))......................((((.((((((....))))))......((((((.....)))))).....)))).. ( -18.40) >DroYak_CAF1 28054 104 + 1 UAUAUAACUCAGGGCCACAAAAUUGCCAUUUAUGUGUAAUGAAAUAACAUGGCCGAGGCGACAAUGUCUCAAUCUUUUGAAUAAGUCAUUCAAUAAUCGCUAGU ......(((.(((((((....(((((((....)).))))).........)))))(((((......)))))......((((((.....))))))......))))) ( -18.82) >consensus AAUAUCACUCAGGCACACAAAAUUGCCAUUUAAAUGUAAUGAAAUUAUAUAGCAGAGGCAACAAUGUCUCAAUCCAUUGAAUAAAUCAUUCAAUAAUCGCUAGU ...........(((..........)))......................((((.((((((....))))))......((((((.....)))))).....)))).. (-12.23 = -12.85 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:49 2006