| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 948,206 – 948,326 |
| Length | 120 |
| Max. P | 0.819036 |
| Location | 948,206 – 948,326 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.28 |
| Mean single sequence MFE | -22.03 |
| Consensus MFE | -22.12 |
| Energy contribution | -22.23 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.26 |
| Structure conservation index | 1.00 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 948206 120 + 20766785 AAUAAGUUUUAAUAUAAUCACUAAGUACAAAUAUUUCAGUGGCACCCACCGGCGACCAUGUAAUUUCACUUAUCGAUGAAAUUUCAUACCUAUCGGCUCCAGCGCCACUGACUUCCCAAU ...................................((((((((.(...((((.....(((.(((((((........))))))).))).....)))).....).))))))))......... ( -23.10) >DroSim_CAF1 59173 120 + 1 AAUAUGUUUUAAUAUAAUCACUAAGUACAAAUAUUUCAGUGGCACCCACCGGCGACCAUGUAAUUUCACUUAUCGAUGAAAUUUCGUACCUAUCGGCUCCAGCGCCACUGACUUCUCAAU ..(((((....)))))...................((((((((.(...((((.....(((.(((((((........))))))).))).....)))).....).))))))))......... ( -22.80) >DroEre_CAF1 144712 120 + 1 UAUUGGUUUUAAGAUAAUCACUAAGUACAAAUAUUUCAGUGGCACCCACCGGCGACCAUGUAAUAUCACUCAUCGAUGAAAUUUCGUACCUAUCGGCUCCAGCGCCACUGACUUCUCAAU ...(((((.......)))))...............((((((((.(...((((.....(((.(((.(((........))).))).))).....)))).....).))))))))......... ( -20.20) >consensus AAUAAGUUUUAAUAUAAUCACUAAGUACAAAUAUUUCAGUGGCACCCACCGGCGACCAUGUAAUUUCACUUAUCGAUGAAAUUUCGUACCUAUCGGCUCCAGCGCCACUGACUUCUCAAU ...................................((((((((.(...((((.....(((.(((((((........))))))).))).....)))).....).))))))))......... (-22.12 = -22.23 + 0.11)
| Location | 948,206 – 948,326 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.28 |
| Mean single sequence MFE | -34.63 |
| Consensus MFE | -30.54 |
| Energy contribution | -30.65 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.819036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 948206 120 - 20766785 AUUGGGAAGUCAGUGGCGCUGGAGCCGAUAGGUAUGAAAUUUCAUCGAUAAGUGAAAUUACAUGGUCGCCGGUGGGUGCCACUGAAAUAUUUGUACUUAGUGAUUAUAUUAAAACUUAUU ..((((...(((((((((((...((((...(.((((.((((((((......)))))))).)))).)...)))).)))))))))))(((((...(((...)))...)))))....)))).. ( -36.30) >DroSim_CAF1 59173 120 - 1 AUUGAGAAGUCAGUGGCGCUGGAGCCGAUAGGUACGAAAUUUCAUCGAUAAGUGAAAUUACAUGGUCGCCGGUGGGUGCCACUGAAAUAUUUGUACUUAGUGAUUAUAUUAAAACAUAUU .((((..(((((.((((......)))).(((((((((((((((((......)))))))).(((((.((((....))))))).))......))))))))).)))))...))))........ ( -32.10) >DroEre_CAF1 144712 120 - 1 AUUGAGAAGUCAGUGGCGCUGGAGCCGAUAGGUACGAAAUUUCAUCGAUGAGUGAUAUUACAUGGUCGCCGGUGGGUGCCACUGAAAUAUUUGUACUUAGUGAUUAUCUUAAAACCAAUA .(((((((((((.((((......)))).((((((((((((((((.......(((....))).(((.((((....))))))).)))))).)))))))))).))))).))))))........ ( -35.50) >consensus AUUGAGAAGUCAGUGGCGCUGGAGCCGAUAGGUACGAAAUUUCAUCGAUAAGUGAAAUUACAUGGUCGCCGGUGGGUGCCACUGAAAUAUUUGUACUUAGUGAUUAUAUUAAAACAUAUU ((((((...(((((((((((.(.(.((((..(((....(((((((......))))))))))...)))).)..).)))))))))))..........))))))................... (-30.54 = -30.65 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:24 2006