Locus 1198

Sequence ID 2R_DroMel_CAF1
Location 4,743,372 – 4,743,462
Length 90
Max. P 0.996697
window2087

overview

Window 7

Location 4,743,372 – 4,743,462
Length 90
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 98.90
Mean single sequence MFE -30.54
Consensus MFE -29.28
Energy contribution -29.88
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.14
Structure conservation index 0.96
SVM decision value 2.73
SVM RNA-class probability 0.996697
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4743372 90 + 20766785
AAUCUCCGGAAAUCUA-AAAACGUAUGCAUGUACGAGUUCUGGGUGUACCGGUGUGUGCGUGUGCGUUGCAUGUAGGUGUUCUUGUGCUGU
.......(((.(((((-..(((((..(((((((((....((((.....))))..)))))))))))))).....))))).)))......... ( -26.40)
>DroSec_CAF1 23008 91 + 1
AAUCUCCGGAAAUCUACAAAACGUAUGCAUGUACGAGUACUGGGUGUACCGGUGUGUGCGUGUGCGUUGCAUGUAGGUGUUCUUGUGCUGU
.......(((.(((((((.(((((..(((((((((..((((((.....))))))))))))))))))))...))))))).)))......... ( -31.90)
>DroSim_CAF1 24885 91 + 1
AAUCUCCGGAAAUCUACAAAACGUAUGCAUGUACGAGUACUGGGUGUACCGGUGUGUGCGUGUGCGUUGCAUGUAGGUGUUCUUGUGCUGU
.......(((.(((((((.(((((..(((((((((..((((((.....))))))))))))))))))))...))))))).)))......... ( -31.90)
>DroEre_CAF1 22489 91 + 1
AAUCUCCGGAAAUCUACAAAACGUAUGCAUGUACGAGUUCUGGGUGUACCGGUGUGUGCGUGUGCGUUGCAUGUAGGUGUUCUUGUGCUGU
.......(((.(((((((.(((((..(((((((((....((((.....))))..))))))))))))))...))))))).)))......... ( -30.60)
>DroYak_CAF1 23816 91 + 1
AAUCUCCGGAAAUCUACAAAACGUAUGCAUGUACGAGUACUGGGUGUACCGGUGUGUGCGUGUGCGUUGCAUGUAGGUGUUCUUGUGCUGU
.......(((.(((((((.(((((..(((((((((..((((((.....))))))))))))))))))))...))))))).)))......... ( -31.90)
>consensus
AAUCUCCGGAAAUCUACAAAACGUAUGCAUGUACGAGUACUGGGUGUACCGGUGUGUGCGUGUGCGUUGCAUGUAGGUGUUCUUGUGCUGU
.......(((.(((((((.(((((..(((((((((...(((((.....))))).))))))))))))))...))))))).)))......... (-29.28 = -29.88 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:47 2006