| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,741,158 – 4,741,261 |
| Length | 103 |
| Max. P | 0.993819 |
| Location | 4,741,158 – 4,741,261 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 72.61 |
| Mean single sequence MFE | -20.16 |
| Consensus MFE | -13.93 |
| Energy contribution | -16.54 |
| Covariance contribution | 2.61 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.69 |
| SVM decision value | 2.43 |
| SVM RNA-class probability | 0.993819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4741158 103 - 20766785 CAGCUGUCUAAAAGUAUGCAAUGAAGAAUCUCGUUUUUGUAUUGCCCACUUUUCGACACCUUUUAAAGUUGCUCCCAAUUCUCCUGGCAUAUCUGUGCUUUUC (((.((((.((((((..((((((.((((......)))).))))))..)))))).))))........(((((....)))))...)))((((....))))..... ( -20.50) >DroSec_CAF1 20797 103 - 1 CAGCUGUCUAAAAGUGUGCAAUGAAGAAUCCCGAUUUGGUAUUGCACACUUUUCGACACCUUUUAUAGUUGCUCCCAAAUCUCCUGGCAUAUCUAUGCUUUUC .(((((((.((((((((((((((..((((....))))..)))))))))))))).))))......((((.((((............))))...))))))).... ( -31.80) >DroSim_CAF1 22689 103 - 1 CAGCUGUCUAAAAGUAUGCAAUGAAGAAUCUCGAUUUCGUAUUGCACACUUUUCGACACCUUUUAAAGUUGCUCCCCAUUCUCCUGGCAUAUCUGUGCUUUUC .((.((((.((((((.(((((((..((((....))))..))))))).)))))).)))).))........................(((((....))))).... ( -23.90) >DroEre_CAF1 20149 95 - 1 GAGCUGUCUAAACUUAUGCAACCAGAAAUCCCGAUUUUG-AAUGCAUACUUUUCGACACUAUUUCAAAUUGCUACAAAUUCUGCUUAC-------UAAUUUUC ((((((((.(((..((((((..(((((.......)))))-..))))))..))).))))........((((......))))..))))..-------........ ( -15.20) >DroYak_CAF1 21617 88 - 1 GAGCUGUUUCCAAUUAUGCAC----GAAGCCCAA-UUUA-AAUGCAUACUUUUCGACACCAUUC------ACAACAUGUUCCUAUUAC--A-CUGUGGUCUUC ..(.((((......((((((.----(((......-))).-..))))))......)))).)..((------(((...(((.......))--)-.)))))..... ( -9.40) >consensus CAGCUGUCUAAAAGUAUGCAAUGAAGAAUCCCGAUUUUGUAUUGCACACUUUUCGACACCUUUUAAAGUUGCUCCCAAUUCUCCUGGCAUAUCUGUGCUUUUC ..(.((((.((((((((((((((..((((....))))..)))))))))))))).)))).)........................................... (-13.93 = -16.54 + 2.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:46 2006