Locus 1196

Sequence ID 2R_DroMel_CAF1
Location 4,736,239 – 4,736,335
Length 96
Max. P 0.734347
window2085

overview

Window 5

Location 4,736,239 – 4,736,335
Length 96
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 80.71
Mean single sequence MFE -27.22
Consensus MFE -10.74
Energy contribution -12.30
Covariance contribution 1.56
Combinations/Pair 1.19
Mean z-score -3.11
Structure conservation index 0.39
SVM decision value 0.43
SVM RNA-class probability 0.734347
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4736239 96 + 20766785
AUUUCUAGCUUGGUUCUCCUUUUUUUGUGUUAUCUAUGAUAACAGAAGACGGAAUGAAACGGAAACGAGAUGGC-UAUCACCAUUACACGGAGCAGC
.......((((.((..(((...((((.(((((((...))))))).)))).)))......((....)).(((((.-.....)))))..)).))))... ( -24.80)
>DroSec_CAF1 15950 93 + 1
AUUGCUGUCUCCGUUCUCCUUUUU---UGUUAUCUAUGAUAAUAGAAGACGGAAUGAAACGGAAACGAGAUGGC-UAUCACCAUUACAAGGAGCAGC
...((((.((((....((((((((---(((((((...)))))))))))).))).((...((....)).(((((.-.....))))).)).)))))))) ( -31.30)
>DroSim_CAF1 17879 93 + 1
AUUGCUGGCUCCGUUCUCUGUUUU---UGUUAUCUAUGAUAACAGAAGACGGAAUGAAACGGAAACGAGAUGGC-UAUCACCAUUACUAGGAGCAGC
...((((.((((.(((((((((((---(((((((...)))))))).)))))))..))).((....)).(((((.-.....)))))....)))))))) ( -32.60)
>DroEre_CAF1 15320 93 + 1
AUUGUUCCUUCGGCUCUCCUUUUU---UGUUAUCUGUGAUAACAGAAGACGGAAUAAAACGGAAACGAGAUGGC-UAUCACCAUUACCAGAAGCAGC
...(((.((((((...((((((((---(((((((...)))))))))))).)))......((....)).(((((.-.....))))).)).)))).))) ( -26.40)
>DroYak_CAF1 16568 93 + 1
AUUGCUGCUUCGGUUCUCCCUUUU---UGUUAUCUAUGAUAACAGAAGACAGAAUAAAACGGAAACGAGAUGGC-UAUCACCAUUACAAGAAGCAGC
...((((((((.(((((...((((---(((((((...)))))))))))..)))))....((....)).(((((.-.....)))))....)))))))) ( -32.50)
>DroAna_CAF1 18827 82 + 1
AUU-------CCGU-----UUUCU---UGUUAUCAGUGAUAACAAAAUGCAAAAUGAAAAGAAAGCGAGAAGGCAUAUUAGCAUCCUAAGAACCAGC
.((-------((((-----(((((---(((((((...))))))......(.....)..))))))))).)))((....((((....))))...))... ( -15.70)
>consensus
AUUGCUGCCUCCGUUCUCCUUUUU___UGUUAUCUAUGAUAACAGAAGACGGAAUGAAACGGAAACGAGAUGGC_UAUCACCAUUACAAGAAGCAGC
.(((((..........(((.((((...(((((((...))))))).)))).)))......((....)).(((((.......)))))......))))). (-10.74 = -12.30 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:45 2006