| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,734,282 – 4,734,402 |
| Length | 120 |
| Max. P | 0.553033 |
| Location | 4,734,282 – 4,734,402 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.73 |
| Mean single sequence MFE | -19.10 |
| Consensus MFE | -13.76 |
| Energy contribution | -14.00 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4734282 120 - 20766785 ACACGGUCAAGAAAUUAAAAAAUCAAUUAUUUGAAUUGAGCCACCUCUAAACAUUUGUUUUCACCCAAACCGAGAUGGCUGAAAAUCCAUCAAAAUACGCAAAUAAUUGCUGGCCCAAAC ....(((((.((..........((((....)))).((.(((((.(((.((((....))))...........))).))))).))......)).......((((....)))))))))..... ( -21.40) >DroSec_CAF1 14051 120 - 1 ACACGGUCCAGAAAUUAAAAAAUCAAUUAUUCGAAUUGACCCACCUCUAAACAUUUGUUUUCACCCAAACCGAGAUGGCCGAAAAUCCAUCAAAAUACGCAAAUAAUUGCUGGCCCAAAA ....((.((((.(((((.....((((((.....))))))..............(((((..((.........))(((((........))))).......)))))))))).)))).)).... ( -20.00) >DroSim_CAF1 15965 120 - 1 ACACGGUCAAGAAAUUAAAAAAUCAAUUAUUCGAAUUGACCCACCUCUAAACAUUUGUUUCCACCCAAACCGAGAUGGCCGAAAAUCCAUCAAAAUACGCAAAUAAUUGCUGGCCCAAAC ....((((((.....(((........)))......))))))............((((...(((..........(((((........))))).......((((....)))))))..)))). ( -17.30) >DroEre_CAF1 13616 117 - 1 -CACGGUCAAGAAAUUAAAAAAUCAAUUAUUCGAAUUGACCCACCUCUACACAUUUGUUCG--CCCAAACCGUGAUGCCCGAAAAUCCAUCAAAAUACGCAAAUAAUUGCUGGCCAAAAC -...(((((.............((((((.....))))))............((.(((((.(--(........(((((..........)))))......)).))))).)).)))))..... ( -16.64) >DroYak_CAF1 14574 114 - 1 -CACGGUCAAGAAAUUAAAAAAUCAAUUAUUCGAAUUGACCCACCUCCAAAUAUUUGCUUU--C---AACCGUGAUGCCCGAAAAUCCAUCAAAAUACGCAAAUAAUUGCUGGUCAAAAC -...((((((.....(((........)))......)))))).(((..(((.(((((((...--.---.....(((((..........)))))......))))))).)))..)))...... ( -20.16) >consensus ACACGGUCAAGAAAUUAAAAAAUCAAUUAUUCGAAUUGACCCACCUCUAAACAUUUGUUUUCACCCAAACCGAGAUGGCCGAAAAUCCAUCAAAAUACGCAAAUAAUUGCUGGCCCAAAC ....((((.((.(((((.....((((((.....))))))..................................(((((........)))))............))))).))))))..... (-13.76 = -14.00 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:44 2006