Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,727,227 – 4,727,335 |
Length | 108 |
Max. P | 0.500000 |
Location | 4,727,227 – 4,727,335 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.19 |
Mean single sequence MFE | -26.16 |
Consensus MFE | -16.58 |
Energy contribution | -16.86 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.17 |
Mean z-score | -1.64 |
Structure conservation index | 0.63 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4727227 108 - 20766785 -CCGAACUGAGGAGUUGGG--GAUUUCCAGUUGGUCAGGCGCUGGCGCAGUGAAAUUUUAAUUAAGCUGCAACUUAAAUUAAUAUAAGUUUUAUUUACUGACCUCCAAUAU -...(((((.((((((...--)))))))))))((((((((....))(((((..(((....)))..)))))((((((........)))))).......))))))........ ( -27.60) >DroSec_CAF1 7319 103 - 1 -----ACUCAGAAGG-GGG--GAUUUCCAUUUGGUUGGGCGGUGGAGCAGUGAAAUUUUAAUUAAGCUGCAACUUAAAUUAAUAUAAGUUUUAUUUACUGACCUCCAAUAU -----........((-(((--....((((......))))((((((((((((..(((....)))..)))))((((((........))))))...))))))).)))))..... ( -26.90) >DroSim_CAF1 9105 103 - 1 -----ACUCAGGAGA-GGG--GACUUCCAGUUGGUCGGGCGGUGGAGCAGUGAAAUUUUAAUUAAGCUGCAACUUAAAUUAAUAUAAGUUUUAUUUACUGACCCCCAAUAU -----.....(((.(-(..--..))))).(((((..(((((((((((((((..(((....)))..)))))((((((........))))))...))))))).)))))))).. ( -31.70) >DroEre_CAF1 7058 106 - 1 -CUCAACUGCAG----GGCUCCACUUCCAGUUGGUCAGUUUGGGGCGCACUGCAAUUCCAAUUAAACUGCAACUUAAAUUAAUACAAGUUUUAUUUACUGACCUCCAAUAU -...(((((.((----(......))).)))))((((((((((((((.....))...)))))..(((((..................))))).....)))))))........ ( -20.57) >DroYak_CAF1 7498 105 - 1 GCUCGACUGAAG----GGG--CAUUUCCAGUUGGUCAGGUUCUGACGCAGUGCAAUUUUAAUAAAGCUGCAACUUAAAUUAAUUUAGGCUUUGUUUACUGACCUCCAAUAU ((((........----)))--).......(..((((((.....((((((((..............)))))..((((((....))))))....)))..))))))..)..... ( -24.04) >consensus _C___ACUGAGGAG__GGG__GAUUUCCAGUUGGUCAGGCGGUGGCGCAGUGAAAUUUUAAUUAAGCUGCAACUUAAAUUAAUAUAAGUUUUAUUUACUGACCUCCAAUAU ................(((......)))....((((((........(((((..(((....)))..)))))((((((........)))))).......))))))........ (-16.58 = -16.86 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:42 2006