Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,718,867 – 4,718,965 |
Length | 98 |
Max. P | 0.677423 |
Location | 4,718,867 – 4,718,965 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 84.39 |
Mean single sequence MFE | -22.78 |
Consensus MFE | -16.32 |
Energy contribution | -16.24 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.19 |
Mean z-score | -1.79 |
Structure conservation index | 0.72 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677423 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4718867 98 + 20766785 ACAAUUCCCGCAGUAAAAUCAUAACAAACAUUGUUUUCCUGCGGGACAGUGUGGCCGUGCUAGAACUGCGUAAAAUUACUAACUGGAAAGACUGAAAU .....((((((((.(((((.((.......)).))))).))))))))((((.(..((..((.......))(((....))).....))..).)))).... ( -26.00) >DroSec_CAF1 2149 98 + 1 ACAAUUCCCGCAGUAAAAUCAUAACAAACUUUGUUUUCCUGCGGGACAGUGUGGCCGUGCUACAGCUGCGUAAAAAUACUAAAUGGAAAGAAUAAAAU .....((((((((.((((.((..........)))))).))))))))(((((((((...)))))).))).............................. ( -24.50) >DroSim_CAF1 2149 98 + 1 ACAAUUCCCGCAGUAAAAUCAUAACAAACUUUGUUUUCCUGCGGGACAGUGUGGCCGUGCUACAGCUGCGUAAAAAUACUAAAUGGAAAGAAUAAAAU .....((((((((.((((.((..........)))))).))))))))(((((((((...)))))).))).............................. ( -24.50) >DroEre_CAF1 2154 98 + 1 AGAAUUCCCGCAGUAAAAUCAUAACAAACUUUGUUUUUCCUUGGGACAGUGUGGCCGUGGCAGCACUGCCUAAAAAUACUAGGUUAUAGAAGUUGAAC ...((..((..((((.......((((.....)))).....(((((.((((((.((....)).)))))))))))...)))).))..))........... ( -22.70) >DroYak_CAF1 2157 92 + 1 ACAAUUCCCGCAGUAAAAUCAUAACAAACUUUGUUUUUCUUUGGGACAGUGUGGCCGUGCCAAAAUUGCGUUAAAAUACUAAUUGGCAA------AAA (((..(((((.((.((((.((..........)).)))))).)))))...))).....(((((..((((.((......))))))))))).------... ( -16.20) >consensus ACAAUUCCCGCAGUAAAAUCAUAACAAACUUUGUUUUCCUGCGGGACAGUGUGGCCGUGCUACAACUGCGUAAAAAUACUAAAUGGAAAGAAUAAAAU .....((((((((.((((.((..........)))))).))))))))((((..(((...)))...)))).............................. (-16.32 = -16.24 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:40 2006