Locus 119

Sequence ID 2R_DroMel_CAF1
Location 1,375,373 – 1,375,493
Length 120
Max. P 0.596973
window255

overview

Window 5

Location 1,375,373 – 1,375,493
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.67
Mean single sequence MFE -34.64
Consensus MFE -32.36
Energy contribution -32.16
Covariance contribution -0.20
Combinations/Pair 1.21
Mean z-score -1.11
Structure conservation index 0.93
SVM decision value 0.13
SVM RNA-class probability 0.596973
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1375373 120 - 20766785
AAAAAGUUGGAAAGAACUCGCUGACGUCCACGGGUCGAGCGGAAGUAGUGGCCUAUGAUGGCUCAAACCUAAAUCAUGCGGCAAGAAAACGGAAGCGAGGGACCAACGCAGCUCGAGCCA
.....(((((......((((((..(((...(..((((....((..((((((((......))).))...)))..))...))))..)...)))..))))))...)))))...((....)).. ( -35.40)
>DroSec_CAF1 7663 120 - 1
AAAAAGUUGGAAAGAACUCGCUGACGUCCACAGGUCGAGCGGAAGUAGUGGCCUAUAAUGGCUCAAACCUAAAUCAUGCGGCAAGAGAACGGAAGCGGGGGACCAGCACAGCUCGAGCCA
.....(((((......((((((..(((.(.(..((((....((..((((((((......))).))...)))..))...))))..).).)))..))))))...)))))...((....)).. ( -34.70)
>DroSim_CAF1 12343 120 - 1
AAAAAGUUGGAAAGAACUCGCUGACGUCCACAGGUCGAGCGGAAGUAGUGGCCUAUAAUGGCUCAAACCUAAAUCAUGCGGCAAGAGAGCGGAAGCGAGGGACCAGCGCAGCUCGAGCCA
.......(((...((.(((((((..((((....((((....((..((((((((......))).))...)))..))...))))......((....))...))))))))).)).))...))) ( -37.50)
>DroEre_CAF1 5698 120 - 1
AAAAAGUUGGAAAGAACUCGUUGACGUCCACAGGUCGAGCGGAAGUAGUGGCCUAUAAUGGCUCAAACUUAAAUUAUGCGGCAAGAGAACGGAAGCGAAGGACCAACGCAGCUCAAGCCA
.......(((...((.(((((((..((((....((((.((....))..(((((......))).)).............)))).......((....))..))))))))).)).))...))) ( -30.30)
>DroYak_CAF1 4112 120 - 1
AAGAAGUUGAAAAGAACUCGCUGGUGUCCUCGGGUCGAGCGGAAGUAGUGGCCUAUAAUGGCUCAAACGUAAAGUAUGCGGCAAGAGAUCGGAAGCGAGGGACUAACGCAGCUCGAGCCA
..((.((((...((..((((((..((..(((..((((.((....))..(((((......))).)).............))))..)))..))..))))))...))....))))))...... ( -35.30)
>consensus
AAAAAGUUGGAAAGAACUCGCUGACGUCCACAGGUCGAGCGGAAGUAGUGGCCUAUAAUGGCUCAAACCUAAAUCAUGCGGCAAGAGAACGGAAGCGAGGGACCAACGCAGCUCGAGCCA
.....(((((......((((((..(((.(.(..((((.((....))..(((((......))).)).............))))..).).)))..))))))...)))))...((....)).. (-32.36 = -32.16 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:53 2006