Locus 1189

Sequence ID 2R_DroMel_CAF1
Location 4,714,206 – 4,714,308
Length 102
Max. P 0.627429
window2078

overview

Window 8

Location 4,714,206 – 4,714,308
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 87.70
Mean single sequence MFE -21.82
Consensus MFE -19.98
Energy contribution -20.06
Covariance contribution 0.08
Combinations/Pair 1.10
Mean z-score -1.35
Structure conservation index 0.92
SVM decision value 0.19
SVM RNA-class probability 0.627429
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4714206 102 + 20766785
UGAUUUUAUUAAUUUCCCAAAUCAAAACAUAAAGCAUGCAAGGGGCGGCUGUUCUGGCUGUCGCCCCCUCCAGGUGCUCCUCCUUCUCCUUCCUCUCUUGCC
((((((............)))))).............((((((((((((.((....)).))))))))....(((....)))................)))). ( -23.10)
>DroSec_CAF1 7725 95 + 1
UGAUUUUAUUAAUUUCCCAAAUCAAAACAUAAAGCAUGCAAGAGGCGGCUGUUCUGGCUGUCGCC-CCUCCAGGUGCUCCUCCU------CCCUCUCCAGCC
((((((............))))))........(((((...((.((((((.((....)).))))))-.))....)))))......------............ ( -17.90)
>DroSim_CAF1 7038 94 + 1
UGAUUUUAUUAAUUUCCCAAAUCAAAACAUAAAGCAUGCAAGGGGCGGCUGUUCUGGCUGUCGCCCCCUCCAGGUGCUCCUCCU------CCCUAUCCAG--
((((((............))))))........(((((....((((((((.((....)).))))))))......)))))......------..........-- ( -22.60)
>DroEre_CAF1 7283 93 + 1
UGAUUUUAUUAAUUUCCCAAAUCAAAACAUAAGGCAUGCAAGGGGCGGCUGUUCUGGCUGUCGCCCCAUCCAGGUGCUC---CU------CCCUGCCCCUCC
((((((............))))))........((((.(..(((((((.(((....(((....))).....))).)))))---))------..)))))..... ( -26.40)
>DroYak_CAF1 6605 96 + 1
UGAUUUUAUUAAUUUCCCAAAUCAAUACAUAAAGCAUGCAAGGGGCGGCUGUUCUGCCUGUCGCUCCAUCCAGGUGCUCCACCU------CCCCACCCCCUC
((((((............)))))).................((((((((..........))))))))....(((((...)))))------............ ( -19.10)
>consensus
UGAUUUUAUUAAUUUCCCAAAUCAAAACAUAAAGCAUGCAAGGGGCGGCUGUUCUGGCUGUCGCCCCCUCCAGGUGCUCCUCCU______CCCUAUCCAGCC
((((((............))))))........(((((....((((((((.((....)).))))))))......)))))........................ (-19.98 = -20.06 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:38 2006