Locus 1187

Sequence ID 2R_DroMel_CAF1
Location 4,713,569 – 4,713,660
Length 91
Max. P 0.828860
window2075

overview

Window 5

Location 4,713,569 – 4,713,660
Length 91
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 83.38
Mean single sequence MFE -32.84
Consensus MFE -25.17
Energy contribution -26.17
Covariance contribution 1.00
Combinations/Pair 1.18
Mean z-score -2.40
Structure conservation index 0.77
SVM decision value 0.71
SVM RNA-class probability 0.828860
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4713569 91 - 20766785
AUCGCAGUCCGCGGUCCGCUGAUUAGGGAUUCAGGUGCGUGAGUGCAUUUCG--UUGGCUCUU-UUUUCGACUCCCUCUUCGGCGGAAUUCCAG-----
.((((.....))))((((((((..(((((.....(..(....)..).....(--((((.....-...))))))))))..)))))))).......----- ( -35.50)
>DroSec_CAF1 7025 92 - 1
AUCGCAGUCCGCGGUCCGCUGAUUAGGGAUUCAGGUGCGUGAGUGCAUUUCG--UUUGCCUUUUUUUUCGACUCCCUCUUCGGCGGAAUUUCAG-----
.((((.....))))((((((((..(((((.((....((....))(((.....--..)))..........)).)))))..)))))))).......----- ( -33.30)
>DroSim_CAF1 6339 91 - 1
AUCGCAGUCCGCGGUCCGCUGAUUAGGGAUUCAGGUGCGUGAGUGCAUUUCG--UUUGCCUUU-UUUUCGACUCCCUCUUCGGCGGAAUUUCAG-----
.((((.....))))((((((((..(((((.(((((((..((((.....))))--..)))))..-.....)).)))))..)))))))).......----- ( -33.31)
>DroEre_CAF1 6675 94 - 1
AUCGCAGUCCGCGGUCCGCUGAUUAGGGAUUCAGGUGCGUGAGUGCAUUUCG--UUUGCUU---UUUUCGACUCCCUCUUCAGCGGAAUUCCAGCCGGC
......(((.((((((((((((..(((((.((....((....))(((.....--..)))..---.....)).)))))..))))))))...)).)).))) ( -35.70)
>DroYak_CAF1 6018 92 - 1
AUCGCAGACCGCGGUCCGCUGAUUAGGGAUUCAGGUGCGUGAGUGCAUUUCG--UUUGCUU-----UUGGACUCCCUCUUCAGCGGAAUUAUAGACGGC
.((((.....))))((((((((..(((((((((((.((....))(((.....--..))).)-----))))).)))))..))))))))............ ( -35.30)
>DroAna_CAF1 8129 90 - 1
AUCGUAGGCCGCU-UUGGCUUAUUAGGGAUUCAGGUGCGUGAGUGCAUUUUGGUUUUGAGUUU-UUUU-------CUUUUCAGAGGAAUUUCAACCGGU
((((((((((...-..))))))...(..((((..(..(....)..).((((((....(((...-..))-------)...))))))))))..)...)))) ( -23.90)
>consensus
AUCGCAGUCCGCGGUCCGCUGAUUAGGGAUUCAGGUGCGUGAGUGCAUUUCG__UUUGCUUUU_UUUUCGACUCCCUCUUCAGCGGAAUUUCAG_____
.((((.....))))((((((((..(((((.((..(..(....)..)....(......)...........)).)))))..))))))))............ (-25.17 = -26.17 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:35 2006