Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,711,839 – 4,711,943 |
Length | 104 |
Max. P | 0.880346 |
Location | 4,711,839 – 4,711,943 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 90.37 |
Mean single sequence MFE | -37.80 |
Consensus MFE | -31.19 |
Energy contribution | -31.33 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.14 |
Mean z-score | -2.51 |
Structure conservation index | 0.83 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4711839 104 - 20766785 GGCCACUUUGGGCCGUGCUAAAUCGCACAAAUUGGCAGUUUAAUUGUUCCAAUUGACAUCGAGGCGAGAUUUGUGCCCCGGUUGCCUGGAGUGGCCUCGACUUC ((((((((..(((.((((......)))).((((((((((...))))..))))))...((((.((((.......)))).)))).)))..))))))))........ ( -41.90) >DroSec_CAF1 5298 104 - 1 GGCCACUUUGGGCCGUGCUAAAUCGCACAAAUUGGCAGUUUAAUUGUUCCAAUUGACAUCGAGGCGAGAUUUGUGCCCCGGUUGCCUGGAGUGGCCUCGACUUC ((((((((..(((.((((......)))).((((((((((...))))..))))))...((((.((((.......)))).)))).)))..))))))))........ ( -41.90) >DroSim_CAF1 4607 104 - 1 GGCCACUUUGGGCCGUGCUAAAUCGCACAAAUUGGCAGUUUAAUUGUUCCAAUUGACAUCGAGGCGAGAUUUGUGCCCCGGUUGCCUGGAGUGGCCUCGACUUC ((((((((..(((.((((......)))).((((((((((...))))..))))))...((((.((((.......)))).)))).)))..))))))))........ ( -41.90) >DroEre_CAF1 4992 103 - 1 GGCCACUUUGGGCCGUGUUAAAUCGCACAAAUUGGCAGUUUAAUUGUUCCAAUUGACAUCGAGGCGAGAUUUGUGCCCGGAGUCCUUGGAGUGGCC-CUGCUUC ((((((((..((..((((......)))).((((((((((...))))..))))))(((..((.((((.......))))))..)))))..))))))))-....... ( -36.90) >DroYak_CAF1 4309 103 - 1 GGCCACUUUGGGCCGUGCUAAAUCGCACAAAUUAGCAGUUUAAUUGUUCCAAUUGACAUCGAGGCGAGAUUUGUGCCCGGAGUCCCUGGAGUGGCU-CUACUUC ((((((((..((..((((......)))).....((((((...))))))......(((..((.((((.......))))))..)))))..))))))))-....... ( -35.40) >DroAna_CAF1 6399 98 - 1 GGCCACUUUCGGCCGUGCUAAAUCGCACAAAUUGGCAGUUUAAUUGUCCCAAUUGACAUUGAGGCAAGAUUUGUGCUCUGGGUCCCUUAAGUAC------CUUU ((((......))))(((((.....(((((((((....((((...((((......))))...))))..)))))))))...((....))..)))))------.... ( -28.80) >consensus GGCCACUUUGGGCCGUGCUAAAUCGCACAAAUUGGCAGUUUAAUUGUUCCAAUUGACAUCGAGGCGAGAUUUGUGCCCCGGGUCCCUGGAGUGGCC_CGACUUC ((((((((..((..(........)(((((((((....((((...((((......))))...))))..)))))))))........))..))))))))........ (-31.19 = -31.33 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:34 2006