Locus 1185

Sequence ID 2R_DroMel_CAF1
Location 4,706,473 – 4,706,593
Length 120
Max. P 0.637408
window2073

overview

Window 3

Location 4,706,473 – 4,706,593
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.50
Mean single sequence MFE -32.17
Consensus MFE -31.40
Energy contribution -32.07
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.98
SVM decision value 0.21
SVM RNA-class probability 0.637408
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4706473 120 - 20766785
CCAAUUUAAAUUCAAAUGUCAGUUGCCAGUGGGUGUGACUGCUGGGCAUCAUUAGCAGACACUCCAGUGUGCUCAACGAUUUGUAUCUGCAACUUAGGUGCAUAUCUAUUAGUCUACGGA
((...................(((((((.((((.(((.(((((((......))))))).))))))).)).))..)))(((.((((((((.....)))))))).)))...........)). ( -34.00)
>DroSim_CAF1 16508 120 - 1
CCAAUUUAAAUUCAAACAUCAGUUGCCAGUGGGUGUGACUGCUGGGCAUCAUUAGCAGACACUCCAGUGUGCUCACCGAUUUGUAUCUUUAACUUAGCUGCACAUCUAUCAGUCUACGGA
((......................((((.((((.(((.(((((((......))))))).))))))).)).)).....(((.((((.((.......)).)))).)))...........)). ( -28.60)
>DroYak_CAF1 15967 116 - 1
CCAAUUUAAAUUCAAACAUCAGUUGCCAGUGGGUGUGACUGCUGGGCAUCAUUAGCAGACACUCCAGUGUGCUCACCGAUUUGUAUCUGCAAUUUAGGUGCAUAUCU----GUUUACGGA
.............(((((......((((.((((.(((.(((((((......))))))).))))))).)).)).....(((.((((((((.....)))))))).))))----))))..... ( -33.90)
>consensus
CCAAUUUAAAUUCAAACAUCAGUUGCCAGUGGGUGUGACUGCUGGGCAUCAUUAGCAGACACUCCAGUGUGCUCACCGAUUUGUAUCUGCAACUUAGGUGCAUAUCUAU_AGUCUACGGA
((......................((((.((((.(((.(((((((......))))))).))))))).)).)).....(((.((((((((.....)))))))).)))...........)). (-31.40 = -32.07 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:33 2006