Locus 1183

Sequence ID 2R_DroMel_CAF1
Location 4,705,022 – 4,705,133
Length 111
Max. P 0.992549
window2069

overview

Window 9

Location 4,705,022 – 4,705,133
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.67
Mean single sequence MFE -33.42
Consensus MFE -28.40
Energy contribution -29.20
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.85
SVM decision value 2.34
SVM RNA-class probability 0.992549
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4705022 111 - 20766785
GCGGUCUCUAAAUUAUAUCGUUCGACUAAUGAA-AUUAAAAUUUCAUGCCAUUCGACGCAAUGUGAAGGCGAACAUGUGUUCCCGUGACCGCAGAACACGGAGCU--------ACACGGA
((((((.(....((((((.((((((...(((((-((....))))))).....)))).)).)))))).((.((((....))))))).))))))......((.....--------...)).. ( -31.40)
>DroSec_CAF1 14738 111 - 1
GCGGUCUCUAAAUUAUAUCGUUCGACUAAUGAA-AUUAAAAUUUCAUGCCAUUCGACGCGAUGUGAAGGCGAACAUGUGUUCCCGUGACCGCAGAACACGGAGCU--------ACACGGA
((((((.(....(((((((((((((...(((((-((....))))))).....)))).))))))))).((.((((....))))))).))))))......((.....--------...)).. ( -37.30)
>DroSim_CAF1 15065 111 - 1
GCGGUCUCUAAAUUAUAUCGUUCGACUAAUGAA-AUUAAAAUUUCAUGCCAUUCGACGCGAUGUGAAGGCGAACAUGUGUUCCCGUGACCGCAAAACACGGAGCU--------ACACGGA
((((((.(....(((((((((((((...(((((-((....))))))).....)))).))))))))).((.((((....))))))).))))))......((.....--------...)).. ( -37.30)
>DroEre_CAF1 14455 117 - 1
GCGGUCUCUAAAUUAUAUCGUUCGACUAAUGAAAAUUAAAAUUUCAUGCCAUUCGACGGGAUGUGAAGGCGAACAUGUGUUCCCGUGACCGCAGAACACGGAGCUAUGUAUGUACG---U
((((((.(....(((((((.(((((...((((((.......)))))).....)))).).))))))).((.((((....))))))).)))))).....(((..((.......)).))---) ( -32.20)
>DroYak_CAF1 14572 109 - 1
GCGGUCUCUAAAUUAUAUCGUUCGACUAAUGAAAAUUAAAAUUUCAUGCCAUUCGACGGGAUGUGAAGGCGAACAUGUGUUCCGGUGACCGCAGAACACGGAGCU--------ACA---U
((((((.((....(((((.((((.....((((((.......))))))(((.((((........))))))))))))))))....)).)))))).............--------...---. ( -28.90)
>consensus
GCGGUCUCUAAAUUAUAUCGUUCGACUAAUGAA_AUUAAAAUUUCAUGCCAUUCGACGCGAUGUGAAGGCGAACAUGUGUUCCCGUGACCGCAGAACACGGAGCU________ACACGGA
((((((.(....(((((((((((((...(((((.........))))).....)))).))))))))).((.((((....))))))).))))))............................ (-28.40 = -29.20 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:29 2006