Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,704,666 – 4,704,826 |
Length | 160 |
Max. P | 0.984035 |
Location | 4,704,666 – 4,704,786 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.22 |
Mean single sequence MFE | -23.66 |
Consensus MFE | -21.89 |
Energy contribution | -21.93 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.69 |
Structure conservation index | 0.93 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.984035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4704666 120 + 20766785 AAUAUGGAAUAUUCAAUGAGUGGUCAUGCAAUCGAAUGACCCGCUAAUUACUGAAUAAACCAUGCUUGCCCACAAACGAGCAUCGACAACUGUAAUUUACCUUCGAUAUUCCAAUUAAAU ....(((((((((.....(((((((((........)))).)))))((((((..........(((((((........)))))))........)))))).......)))))))))....... ( -28.07) >DroSec_CAF1 14388 114 + 1 ------GAAUAUUCAAUGAGUGGUCAUGCAAUCGAGUGACCCGCUAAUUACUGAAUAAACCAUGCUUGCCCACAAACGAGCAUCGACAACUGUAAUUUACCUUCGAUAUUCCAAUUAAAU ------(((((((.....(((((((((........)))).)))))((((((..........(((((((........)))))))........)))))).......)))))))......... ( -22.57) >DroSim_CAF1 14715 114 + 1 ------GAAUAUUCAAUGAGUGGUCAUGCAAUCGAGUGACCCGCUAAUUACUGAAUAAACCAUGCUUGCCCACAAACGAGCAUCGACAACUGUAAUUUACCUUCGAUAUUCCAAUUAAAU ------(((((((.....(((((((((........)))).)))))((((((..........(((((((........)))))))........)))))).......)))))))......... ( -22.57) >DroEre_CAF1 14113 114 + 1 ------GCAUAUUCAAUGAGUGGUCAUGCAAUCGGGUGACCCGCUAAUUACUGAAUAAACCAUGCUUGCCCACAAACGAGCAUCGACAACUGUAAUUUACCUUCGAUAUUCCAAUUAAAU ------(((((((((...(((((((((.(....).)))).)))))......))))))..(.(((((((........))))))).).....)))........................... ( -22.50) >DroYak_CAF1 14230 114 + 1 ------GAAUAUUCACUGAGUGGUCAUGCAAUUGAGUGACCCGCUAAUUACUGAAUAAACCAUGCUUGCCCACAAACGAGCAUCGACAACUGUAAUUUACCUUCGAUAUUCCAAUUAAAU ------(((((((.....(((((((((........)))).)))))((((((..........(((((((........)))))))........)))))).......)))))))......... ( -22.57) >consensus ______GAAUAUUCAAUGAGUGGUCAUGCAAUCGAGUGACCCGCUAAUUACUGAAUAAACCAUGCUUGCCCACAAACGAGCAUCGACAACUGUAAUUUACCUUCGAUAUUCCAAUUAAAU ......(((((((.....(((((((((.(....).)))).)))))((((((..........(((((((........)))))))........)))))).......)))))))......... (-21.89 = -21.93 + 0.04)
Location | 4,704,706 – 4,704,826 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.67 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -22.60 |
Energy contribution | -22.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 1.00 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.951828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4704706 120 + 20766785 CCGCUAAUUACUGAAUAAACCAUGCUUGCCCACAAACGAGCAUCGACAACUGUAAUUUACCUUCGAUAUUCCAAUUAAAUUGUGUAAACAAUUUGGCAUAAGCCAGAGGUCCUUAAUUAC ...................(.(((((((........))))))).)......((((((.(((((.............(((((((....)))))))(((....))).)))))....)))))) ( -22.60) >DroSec_CAF1 14422 120 + 1 CCGCUAAUUACUGAAUAAACCAUGCUUGCCCACAAACGAGCAUCGACAACUGUAAUUUACCUUCGAUAUUCCAAUUAAAUUGUGUAAACAAUUUGGCAUAAGCCAGAGGUCCUUAAUUAC ...................(.(((((((........))))))).)......((((((.(((((.............(((((((....)))))))(((....))).)))))....)))))) ( -22.60) >DroSim_CAF1 14749 120 + 1 CCGCUAAUUACUGAAUAAACCAUGCUUGCCCACAAACGAGCAUCGACAACUGUAAUUUACCUUCGAUAUUCCAAUUAAAUUGUGUAAACAAUUUGGCAUAAGCCAGAGGUCCUUAAUUAC ...................(.(((((((........))))))).)......((((((.(((((.............(((((((....)))))))(((....))).)))))....)))))) ( -22.60) >DroEre_CAF1 14147 120 + 1 CCGCUAAUUACUGAAUAAACCAUGCUUGCCCACAAACGAGCAUCGACAACUGUAAUUUACCUUCGAUAUUCCAAUUAAAUUGUGUAAACAAUUUGGCAUAAGCCAGAGGUCCUUAAUUAC ...................(.(((((((........))))))).)......((((((.(((((.............(((((((....)))))))(((....))).)))))....)))))) ( -22.60) >DroYak_CAF1 14264 120 + 1 CCGCUAAUUACUGAAUAAACCAUGCUUGCCCACAAACGAGCAUCGACAACUGUAAUUUACCUUCGAUAUUCCAAUUAAAUUGUGUAAACAAUUUGGCAGAAGCCAGAGGUCCUUAAUUAC ...................(.(((((((........))))))).)......((((((.(((((.............(((((((....)))))))(((....))).)))))....)))))) ( -22.60) >consensus CCGCUAAUUACUGAAUAAACCAUGCUUGCCCACAAACGAGCAUCGACAACUGUAAUUUACCUUCGAUAUUCCAAUUAAAUUGUGUAAACAAUUUGGCAUAAGCCAGAGGUCCUUAAUUAC ...................(.(((((((........))))))).)......((((((.(((((.............(((((((....)))))))(((....))).)))))....)))))) (-22.60 = -22.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:28 2006