Locus 1181

Sequence ID 2R_DroMel_CAF1
Location 4,699,799 – 4,699,893
Length 94
Max. P 0.945747
window2066

overview

Window 6

Location 4,699,799 – 4,699,893
Length 94
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.30
Mean single sequence MFE -28.28
Consensus MFE -21.83
Energy contribution -22.88
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.72
Structure conservation index 0.77
SVM decision value 1.36
SVM RNA-class probability 0.945747
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4699799 94 + 20766785
---------UUCGAUGAUCUAGUACUAAUACUCCA-----UCUAGCUGGUCAGCUUCUCCCAGAUCAGCAUGACCAUGCAGAUGUUGGGCGUGACGUGGACCAGGUAG
---------...((((....((((....)))).))-----))((.((((((.((.((.((((((((.((((....)))).))).)))))...)).)).)))))).)). ( -30.10)
>DroVir_CAF1 10886 89 + 1
---------------UAACUAUG--UAAUACUCUAA--CGCUUAGCUGGUCAGCUUCUCCCAAAUGAGCAUGACCAUGCAAAUGUUGGGCGUUACGUGGACCAGGUAC
---------------...(((((--(((..(.((((--((.((.(((((((((((.(........)))).)))))).)))).)))))))..))))))))......... ( -29.60)
>DroPse_CAF1 9728 101 + 1
GAUGCUAGAUCCUAGGUUCUGGU--UAAUACUCUA-----UCUAGCUGGUCAGCUUCUCCCAGAUCAGCAUGACCAUGCAGAUGUUGGGCGUGACGUGGACCAGGUAC
...((((((.(....).))))))--..........-----..((.((((((.((.((.((((((((.((((....)))).))).)))))...)).)).)))))).)). ( -32.80)
>DroMoj_CAF1 11723 92 + 1
---------------GAACUAGUU-GAAUACUCUAAUACGCCUAGCUGGUCAGCUUCUCCCAUAUCAGCAUAACCAUGCAAAUGUUGGGCGUUACGUGGACCAAGUAC
---------------.........-......((((..((((((((((((..........))).....((((....))))....)))))))))....))))........ ( -20.40)
>DroAna_CAF1 10285 81 + 1
---------UU-------------CUAAUACUCCA-----UCUAGCUGGUCAGCUUCUCCCAGAUCAGCAUAACCAUGCAGAUAUUGGGCGUGACGUGAACCAGGUAG
---------..-------------...........-----.(((.(((((..((.((.((((((((.((((....)))).))).)))))...)).))..))))).))) ( -25.20)
>DroPer_CAF1 9725 101 + 1
GAUUCUAGAUCCUAGGUUCUGGU--UAAUACUCUA-----UCUAGCUGGUCAGCUUCUCCCAGAUCAGCAUGACCAUGCAGAUGUUGGGCGUGACGUGGACCAGGUAC
..........(((.(((((..((--((...(((((-----(((.(((((((((((((.....))..))).)))))).)))))))..)))..))))..))))))))... ( -31.60)
>consensus
_________U_____GAUCUAGU__UAAUACUCUA_____UCUAGCUGGUCAGCUUCUCCCAGAUCAGCAUGACCAUGCAGAUGUUGGGCGUGACGUGGACCAGGUAC
..........................................((.((((((.((.((.((((((((.((((....)))).))).)))))...)).)).)))))).)). (-21.83 = -22.88 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:26 2006