Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,684,146 – 4,684,254 |
Length | 108 |
Max. P | 0.818768 |
Location | 4,684,146 – 4,684,254 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 80.74 |
Mean single sequence MFE | -29.02 |
Consensus MFE | -21.15 |
Energy contribution | -21.93 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.31 |
Mean z-score | -1.77 |
Structure conservation index | 0.73 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818768 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4684146 108 - 20766785 U-----GUUGAUCUACAUUUU-CAUUUCAUUGACAGACCUCCCAGUCUGGCAUCAUGCACCGCAGCAUACUCGGUCAGCUUCUCCCCGAGGCUAUGGUAUGUUUCCUGGAAAAU (-----((((((........(-((......)))(((((......)))))..)))).)))(((.(((((((.((...((((((.....)))))).)))))))))...)))..... ( -25.20) >DroVir_CAF1 4961 114 - 1 CCAAGCCCUGCUCACGAUUUUCCUCUCUCGUUGCAGACCUCGCAGUCGGGCAUUAUGCAUCGCAGUAUUCUGGGCCAGCUGCUGCCCGAGGCUAUGGUGUGCUUCCUGGAGAAC .......................(((((.(..(((.(((..((..(((((((.((.((..(.(((....))).)...)))).))))))).))...))).)))...).))))).. ( -35.70) >DroSec_CAF1 6600 103 - 1 ----------AUCUUAGUUUU-CAUUUCCUUGACAGACCUCCCAGUCUGGAAUCAUGCACCGCAGCAUACUCGGUCAGCUUCUUCCCGAGGCUAUGGUCUGUUUCCUGGAAAAU ----------...........-..(((((..((((((((....(((((((((....((((((.((....))))))..))...))))..)))))..))))))))....))))).. ( -31.40) >DroSim_CAF1 7039 108 - 1 A-----CUUGAUCUGAAUUUU-CAUUUCGUUAACAGACCUCCCAGUCUGGAAUCAUGCACCGCAGCAUACUCGGUCAGCUUCUUCCCGAGGCUAUGGUCUGUUUCCUGGAAAAU .-----...((..(((....)-))..))(..((((((((....(((((((((....((((((.((....))))))..))...))))..)))))..))))))))..)........ ( -28.60) >DroEre_CAF1 6631 106 - 1 -------AUGAUCCACAUUUU-CAUUUCCUUGGCAGACCUCCCAAUCUGGCAUCAUGCACCGCAGUAUCCUCGGUCAGCUUCUCCCCGAGGCUAUGGUUUGUUUCCUGGAAAAU -------..............-..(((((..((((((((..........((.....))......(((.((((((..((...))..)))))).)))))))))))....))))).. ( -27.30) >DroYak_CAF1 6515 103 - 1 ----------AUCUACUUUAU-UGUUUCCUUGACAGACCUCCCAAUCUGGCAUCAUGCACCGCAGCAUCCUUGGUCAACUUCUCCCCGAGGCCAUGGUUUGUUUCCUGGAAAAU ----------...........-..(((((..((((((((........((((...((((......)))).(((((...........))))))))).))))))))....))))).. ( -25.90) >consensus ________UGAUCUACAUUUU_CAUUUCCUUGACAGACCUCCCAGUCUGGCAUCAUGCACCGCAGCAUACUCGGUCAGCUUCUCCCCGAGGCUAUGGUCUGUUUCCUGGAAAAU ........................(((((..((((((((.........(((...((((......)))).....)))((((((.....))))))..))))))))....))))).. (-21.15 = -21.93 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:23 2006