Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,682,700 – 4,682,878 |
Length | 178 |
Max. P | 0.729088 |
Location | 4,682,700 – 4,682,799 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 82.12 |
Mean single sequence MFE | -38.80 |
Consensus MFE | -26.52 |
Energy contribution | -27.50 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.30 |
Mean z-score | -1.42 |
Structure conservation index | 0.68 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4682700 99 + 20766785 AGCUUGAGGCUGCGGACACCGAUGGCUUUGGUUUUAUGACUGGUGGCGCCUUAGCCGCUGGUGAGUUUGUCUCGCUUCCAGUCACCGGUUUCUGACGCA ........((..((((.((((.(((((..(((......((..(((((......)))))..))(((.....))))))...))))).)))).))))..)). ( -37.20) >DroPse_CAF1 5937 96 + 1 AGCUGGUGGCACC---CCCAACUGGUUUGGGCUUGAUGGCUGGUGGAGGCUUGGCCGCCGGCGAGUUGGACUCGCUGCCAGUGAUCGGCUUCUGGCGUA .((..(.(((...---(((((.....)))))..((((.((((((((.(((...))).))((((((.....)))))))))))).))))))).)..))... ( -45.30) >DroSec_CAF1 5157 99 + 1 AGCUUGAGGCUGCGGACACCGAUGGCUUUGGUUUUAUGACUGGUGGCGCCUUAGCCGCUGGUGAGUUCGUCUCGCUUCCAGUCACCGGUUUUUGACGCA .((..(((((.(((((((((((.....)))))....(.((..(((((......)))))..)).)))))))...)))))..((((........)))))). ( -36.90) >DroEre_CAF1 5181 99 + 1 AGCUUGAAGCUGCGGAUACCGAUGGCUUUGGUUUUAUGGCUGGUGGCGCCUUAGUCGCUGGUGAGUUUGUCUCGCUUCCAGUCACCGGUUUCUGACGCA ........((..((((.((((.(((((..(((......((..(((((......)))))..))(((.....))))))...))))).)))).))))..)). ( -35.20) >DroYak_CAF1 5065 99 + 1 AGCUUGACGCUGCGGACACCGAUGGCUUUGGUUUUAUGGCUGGUGGCGCCUUAGCUGCUGGUGAGUUUGUCUCGCUUCCAGUCACCGGUUUCUGACGCA ........((..((((.((((.(((((..(((......((..(..((......))..)..))(((.....))))))...))))).)))).))))..)). ( -35.00) >DroPer_CAF1 5950 96 + 1 AGCUGGUGGCACC---CCCAACUGGUUUGGGCUUGAUGGCUGGUGGAGGCUUGGCCGCCGGCGAGUUGGACUCGCUGCCAGUAAUCGGCUUCUGGCGUA .((..(.(((...---(((((.....)))))..((((.((((((((.(((...))).))((((((.....)))))))))))).))))))).)..))... ( -43.20) >consensus AGCUUGAGGCUGCGGACACCGAUGGCUUUGGUUUUAUGGCUGGUGGCGCCUUAGCCGCUGGUGAGUUUGUCUCGCUUCCAGUCACCGGUUUCUGACGCA ........((..((((.((((.(((((..(((......(((((((((......)))))))))(((.....))))))...))))).)))).))))..)). (-26.52 = -27.50 + 0.98)
Location | 4,682,759 – 4,682,878 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.06 |
Mean single sequence MFE | -42.88 |
Consensus MFE | -25.28 |
Energy contribution | -25.45 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.38 |
Mean z-score | -1.94 |
Structure conservation index | 0.59 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4682759 119 - 20766785 AACCAGCAGCAACUGGCCAACAACCUUGCAAAGAUGGCGGUGCUCGGUUGCAUCGCCUUAGCUGGUUACAGCAUGGAGCUGCGUCAGAAACCGGUGACUGGAAGCGAGACAAACUCACC (((((((.((((..((.......))))))......((((((((......))))))))...))))))).((((.....)))).(((.(...(((....).))...)..)))......... ( -41.10) >DroVir_CAF1 3628 119 - 1 AACCAGCAGCAAUUGGCCAACAAUCUGGCCAAAAUGGCCGUGCUCGGCUGCAUAGCUCUGGCUGGCUACGACAUGGAGCUGCGCAACAAGCCCAUCACAGGCAACGAAUCCAGCUCGCC .....(((((..(((((((......))))))).....(((((.(((...((.((((....))))))..)))))))).)))))((.....(((.......)))...((.......)))). ( -42.20) >DroGri_CAF1 3812 119 - 1 AACCAGCAGCAGCUGGCUAACAAUUUGGCCAAAAUGGCCGUACUUGGCUGCAUCGCUCUCGCCGGCUACGGCAUGGAGUUGCGUAACAAACCGAUUACGGGCAGCGAAUCCAAUUCGCC ..(((((....)))))....(((..(((((.....)))))...)))(((((..(((.(((((((....))))...)))..))).......(((....))))))))((((...))))... ( -42.60) >DroWil_CAF1 2834 119 - 1 AAUCAACAGCAGUUGGCAAACAAUUUGGCCAAAAUGGCUGUUCUGGGCUGCAUUGCUUUAGCCGGCUACCAAAUGGAGCUGCGCCACAAGCCCAUCACAGGCAGCGAAUCGAAUUCGCC ....((((((..(((((..........)))))....)))))).((((((((...))....(((((((.((....))))))).))....)))))).........((((((...)))))). ( -38.90) >DroMoj_CAF1 3460 119 - 1 AACCAGCAGCAGUUGGCCAAUAACCUGGCCAAAAUGGCUGUGCUCGGCUGCAUAGCUUUGGCCGGCUACACCAUGGAGCUGCGCAACAAGCCAAUCACUGGUAGCGAGUCCAGCUCGCC .(((((......(((((((......)))))))..(((((.(((.(((((.(((((((......))))).....)).))))).)))...)))))....))))).(((((.....))))). ( -50.90) >DroAna_CAF1 7933 119 - 1 AACCAGCAGCAACUGGCCAACAACCUGGCCAAGAUGGCCGUUCUCGGGUGCAUUGCCUUGGCGGGCUAUAGCAUGGAGCUGCGCCAGAAACCAGUCACGGGCAGUGAGGCCAAUUCCCC .............(((((....((((((((.....))))(....))))).(((((((((((((((((.........)))).)))))((......))..)))))))).)))))....... ( -41.60) >consensus AACCAGCAGCAACUGGCCAACAACCUGGCCAAAAUGGCCGUGCUCGGCUGCAUAGCUUUGGCCGGCUACAGCAUGGAGCUGCGCAACAAACCAAUCACAGGCAGCGAAUCCAACUCGCC ..((.(((((...((((((......))))))...((((((.....(((......))).....)))))).........)))))((.....))........))..(((((.....))))). (-25.28 = -25.45 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:22 2006