Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,682,258 – 4,682,378 |
Length | 120 |
Max. P | 0.648197 |
Location | 4,682,258 – 4,682,378 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.33 |
Mean single sequence MFE | -42.83 |
Consensus MFE | -27.50 |
Energy contribution | -27.58 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.43 |
Mean z-score | -1.59 |
Structure conservation index | 0.64 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648197 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4682258 120 - 20766785 CCUCAUCUGGGAUAAUGGAACUCGCGCUCAGCUUAAGGAUUUCCUCGAGCAGCAGCGAACGGCAUCCGCCAAGGAGACGCAUGAGGACAUUGCUCAGGUCUCUGAGCUGGUUUCCAGCUU ....(((((((.(((((...(((((((((.(((..(((....)))..)))..........(((....)))...))).)))..)))..))))))))))))....(((((((...))))))) ( -45.70) >DroVir_CAF1 3094 120 - 1 UCUCUUUUGGGACAAUGGCACGCGCGCACAGCUCAAGGAUUUCCUGGAGCAGCAGCGCCUGGCAUCCGCCAAAGAGACACACGAGGAUAUUGCACAAGUCUACGAGCUGGUAGCCGGCUU (((((((.((((...((.((.((((((...((((.(((....))).)))).)).)))).)).))))).).)))))))....((.((((.........)))).))((((((...)))))). ( -42.60) >DroGri_CAF1 3299 120 - 1 CCUGAUUUGGGACAAUGGGACGCGGGCCCAACUCAAGGAUUUCCUUGAGCAGCAGCGCACUGCAUCCGCCAAGGAAACACACGAGGAUAUUGCCCAGGUCUACGAACUGGUGAACAGCUU ...((((((((.(((((...((((((.....(((((((....)))))))..((((....)))).)))))...(....)......)..)))))))))))))......(((.....)))... ( -42.30) >DroWil_CAF1 2291 120 - 1 CCUCAUCUGGGAUAAUGGAACAAGAGCUCAGUUGAAGGAUUUCCUAGAGCAGCAACGAUUAGCAUCCGCCAAGGAGACACAUGAGGAUGUUGCUCAGGUGUAUGAACUGGUUUCCAGUUU ...((((((((..............(((..(((..(((....)))..))))))......((((((((..((.(....)...)).))))))))))))))))...(((((((...))))))) ( -34.20) >DroMoj_CAF1 2938 120 - 1 UCUCAUCUGGGAUAAUGCAACGCGCGCUCAGCUCAAGGACUUUCUUGAGCAGCAGCGUCUGGCCUCCGCCAAAGAGACGCACGAGGACAUUGCUCAGGUCUACGAGCUGGUCUCCAGCUU ....(((((((.((((((..((.((((((.((((((((....)))))))).........((((....))))..))).))).))..).))))))))))))....(((((((...))))))) ( -48.00) >DroAna_CAF1 7456 120 - 1 CCUCAUUUGGGACAAUGGAACCCGUGCCCAGCUCAAGGACUUCCUCGAGCAGCAGCGUACGGUCUCGGCGAAGGAGACGCACGAGGACAUUGCCCAAGUUUCGGAGCUGGUCUCUACGUU ....(((((((.(((((...(((((((...((((.(((....))).))))...........(((((.......)))))))))).)).))))))))))))...((((.....))))..... ( -44.20) >consensus CCUCAUCUGGGACAAUGGAACGCGCGCUCAGCUCAAGGAUUUCCUCGAGCAGCAGCGAACGGCAUCCGCCAAGGAGACACACGAGGACAUUGCUCAGGUCUACGAGCUGGUCUCCAGCUU ....(((((((.(((((....((((((...((((.(((....))).)))).)).))))......(((.....(....)......)))))))))))))))....((((((.....)))))) (-27.50 = -27.58 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:20 2006