Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,671,438 – 4,671,540 |
Length | 102 |
Max. P | 0.524328 |
Location | 4,671,438 – 4,671,540 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 89.08 |
Mean single sequence MFE | -38.27 |
Consensus MFE | -30.95 |
Energy contribution | -30.70 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.26 |
Mean z-score | -1.92 |
Structure conservation index | 0.81 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4671438 102 - 20766785 ACGUGGAGCGGCUGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGGAAGAGCAGGCCAAGAAGGCGGGUCUGUUCAGUAUGGUACACAUCAGGGACA ..(((..((..(((((......))))).((.((....)).)).....))....(((((((((.........))))))))).........))).......... ( -35.70) >DroSec_CAF1 11263 102 - 1 ACGUGGAGCGGCUGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGGAAGAGCAGGCCAAGAAGGCGGGCUUGUUCAGUAUGGUGCACAUCAGGGACA .(.(((.(((.(((((......))))).....)))..((((((....((....(((((((((.........))))))))).)).))))))...))).).... ( -37.90) >DroSim_CAF1 10634 102 - 1 ACGUGGAGCGGCUGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGGAAGAGCAGGCCAAGAAGGCGGGCUUGUUCAGUAUGGUGCACAUCAGGGACA .(.(((.(((.(((((......))))).....)))..((((((....((....(((((((((.........))))))))).)).))))))...))).).... ( -37.90) >DroEre_CAF1 10658 102 - 1 AUGUGGAGCGGCUGCCUCAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCCGAAGAGCAGGCCAAGAAGGCGGGUCUGUUCAGUAUGGUCCACAUCAGAGACA (((((((.(((((((((....))))...((.((....)).))....))))...(((((((((.........))))))))).....).)))))))........ ( -44.90) >DroYak_CAF1 10608 102 - 1 AUGUGGAGCGGCUGCCACAGAAGGCGGAGGAGCGCAAGCGACAGGAGGCGGUUGAGCAGACCAAGAAGGCGGGUCUGUUCAGUAUGGUUCACAUCAGAGACA (((((((.((((((((......)))...(..((....))..)....)))..(((((((((((.........)))))))))))..)).)))))))........ ( -38.10) >DroAna_CAF1 12091 102 - 1 AUGUGGAGCGGCUGCCCCAGAAGGCGGAGGAGAAGCAGCGCAAGCAGGCGGAGGAGCGGGUUGAAAAGGCCGGACUGUUCAGCACCGUUCACAUCAAGGACA (((((.((((((((((......)))))..........((....))..((.(((.(((.((((.....)))).).)).))).)).))))))))))........ ( -35.10) >consensus ACGUGGAGCGGCUGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGGAAGAGCAGGCCAAGAAGGCGGGUCUGUUCAGUAUGGUGCACAUCAGGGACA ..(((..((..(((((......))))).((.((....)).)).....))....(((((((((.........))))))))).........))).......... (-30.95 = -30.70 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:19 2006