Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,652,963 – 4,653,075 |
Length | 112 |
Max. P | 0.682273 |
Location | 4,652,963 – 4,653,075 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.56 |
Mean single sequence MFE | -31.32 |
Consensus MFE | -23.18 |
Energy contribution | -23.43 |
Covariance contribution | 0.26 |
Combinations/Pair | 1.29 |
Mean z-score | -1.74 |
Structure conservation index | 0.74 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4652963 112 - 20766785 AUUUUCGGGGCUAUCCCCGGACACUAACAUUCCCCGAUCGUGGCU--UACUCAGCUGUUCGCAGCGCCAGUUAAUUCGCAACUGAU------UCUUAACUGGUUAUGCAGUUCCAGACCA ...(((((((....)))))))..............(.((.(((..--.(((((((((....))))(((((((((.(((....))).------..)))))))))..)).))).))))).). ( -31.80) >DroSec_CAF1 7344 112 - 1 AUUUUCGGGGCUAUCCCCGGCCACUCACAUUCCCCGAGCGCGGCU--UACUCAGCUGUUCGCAGCGCCAGUUAAUUCGCAACUGAU------UCUUAACUGGUUAUGCAGUUCCAGACCA ....((((((....))))))...............((((((((((--.....))))))..(((..(((((((((.(((....))).------..)))))))))..))).))))....... ( -34.00) >DroSim_CAF1 7614 112 - 1 AUUUUCGGGGCUAUCCCCGGCCACUCACAUUCCCCGAGCGCGGCU--UACUCAGCUGUUCGCAGCGCCAGUUAAUUCGCAACUGAU------UCUUAACUGGUUAUGCAGUUCCAGACCA ....((((((....))))))...............((((((((((--.....))))))..(((..(((((((((.(((....))).------..)))))))))..))).))))....... ( -34.00) >DroEre_CAF1 7545 112 - 1 AUUUUCGGGGCUAUCCCCGGCCACUCACAUUCUCCGCGCACGGCU--UCCUCAGCUGUUCGCAGCGCCAGUUAAUUCGCAACUGAU------UCUUAACUGGUUAUGCCGUUCCAGUCCA .......(((((.....((((..............(((.((((((--.....)))))).)))...(((((((((.(((....))).------..)))))))))...))))....))))). ( -35.40) >DroYak_CAF1 7722 112 - 1 AUUUUCGGGGCUAUCCCCGACCACUCACAUUUUCCAAGCGCGGCU--UACUCAGCUGUUCGCAGCGCCAGCUAAUUCGCAACUGAU------UCUUAACUGGUUAUGCAGUUCCAGUCCA ....((((((....)))))).................(.((((((--.....)))))).)(((..(((((.(((.(((....))).------..))).)))))..)))............ ( -27.70) >DroAna_CAF1 6913 103 - 1 AUUUUCGGGGCUGUCCCC-----------------AAUCGCGGGAUAUUCUCAUCCGCUCUGAGCACCAGGUUAUUUGCAACUGAGACUGCCACUCAACUGGUUUUGCACUUACAGUCUA ....((((((((((((((-----------------....).)))))).........)))))))(((((((((.....))...((((.......)))).)))))...))............ ( -25.00) >consensus AUUUUCGGGGCUAUCCCCGGCCACUCACAUUCCCCGAGCGCGGCU__UACUCAGCUGUUCGCAGCGCCAGUUAAUUCGCAACUGAU______UCUUAACUGGUUAUGCAGUUCCAGACCA ....((((((....))))))...................((((((.......))))))..(((..(((((((((....................)))))))))..)))............ (-23.18 = -23.43 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:18 2006