Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,645,908 – 4,646,027 |
Length | 119 |
Max. P | 0.543890 |
Location | 4,645,908 – 4,646,027 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.51 |
Mean single sequence MFE | -45.60 |
Consensus MFE | -28.98 |
Energy contribution | -27.52 |
Covariance contribution | -1.46 |
Combinations/Pair | 1.58 |
Mean z-score | -1.60 |
Structure conservation index | 0.64 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4645908 119 + 20766785 -CAUCCUACCGGGUCUGACCGGUGAGUCGCAGGCGGAGUACAUUAAGUGUCUCGUCUUCGCCGCCCAGCAGGCUGGCAUGCGAGUGGUGGUGUUUAAUAACCGCGGACUCGGCGGCAUAG -.....((((((......)))))).(((((((((((..(((.....)))..))))))..((((((.....))).)))...(((((.(((((........))))).).))))))))).... ( -49.50) >DroVir_CAF1 985 119 + 1 -UAUAUUGCCAGGUCUGACUGGCGAAUCGCAGGCGGAAUACAUUAAGUGUCUGGUCUUUGCCGCCCAGCAGGCGGGCAUGCGUGUGGUUGUCUUUAAUAAUCGAGGUCUUGGCGGCAUUG -....(((((((......))))))).....((((.(.((((.....)))).).)))).(((((((..(((.(((....))).)))((((((.....))))))........)))))))... ( -40.10) >DroGri_CAF1 871 119 + 1 -AAUAUUGCCAGGUCUGACUGGCGAAUCGCAGGCGGAGUAUAUUAAGUGUCUGGUCUUUGCCGCUCAGCAGGCGGCCAUGCGUGUGGUUGUCUUCAAUAAUCGAGGACUUGGCGGCAUUG -(((.(((((((((((((.(((((((...((((((............))))))...))))))).)).(.((((((((((....)))))))))).).........))))))))))).))). ( -44.30) >DroWil_CAF1 558 120 + 1 GAAUUUUGCCCGGCCUGACCGGAGAAUCGCAGGCGGAAUAUAUAAAAUGUCUCGUCUUCGCCGCCCAGCAAUCUGGUAUGCGUGUGGUGGUAUUCAAUAAUCGAGGUUUGGGUGGAAUUG .(((((..((((((((((...(((.((((((((((..((((.....))))..))))).((((((((((....))))...))).)))))))).))).....)).))).)))))..))))). ( -42.00) >DroMoj_CAF1 1050 119 + 1 -GAUAUUGCCCGGGCUGACGGGCGAAUCGCAGGCAGAGUAUAUUAAAUGCCUGGUGUUUGCUGCCCAGCAGGCGGGCAUGCGUGCUGUUGUCUUCAAUAAUCGAGGUCUGGGCGGCAUCG -(((.(((((((......)))))))))).((((((............)))))).....((((((((((((.(((....))).))))...(.((((.......)))).).))))))))... ( -51.50) >DroAna_CAF1 518 119 + 1 -CAUUCUGCCAGGACUCACCGGCGAGUCCCAGGCGGAAUACAUUAAAUGCCUCGUCUUUGCCGCCCAGCAAGCCGGCAUGCGGGUUGUGGUUUUCAACAAUCGUGGUCUCGGUGGCAUUG -.((((((((.((((((......))))))..))))))))......(((((((((.....(((((...(((.(....).))).((((((........)))))))))))..))).)))))). ( -46.20) >consensus _AAUAUUGCCAGGUCUGACCGGCGAAUCGCAGGCGGAAUACAUUAAAUGUCUCGUCUUUGCCGCCCAGCAGGCGGGCAUGCGUGUGGUGGUCUUCAAUAAUCGAGGUCUCGGCGGCAUUG .....(((((((((((...(((((((....(((((............)))))....)))))))....(.((((((.(((....))).)))))).).........)))))))))))..... (-28.98 = -27.52 + -1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:12 2006