Locus 117

Sequence ID 2R_DroMel_CAF1
Location 1,374,051 – 1,374,170
Length 119
Max. P 0.863438
window252

overview

Window 2

Location 1,374,051 – 1,374,170
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.38
Mean single sequence MFE -34.61
Consensus MFE -30.14
Energy contribution -30.18
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.46
Structure conservation index 0.87
SVM decision value 0.84
SVM RNA-class probability 0.863438
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1374051 119 - 20766785
-AGUGGUUGAAUUAUGGCAGCUUGUUGGCAUAACAUGCACGUGCCUGUAAGGCAGUCGAGGCUAGAGGAAAUCGCAUAUAAUAAGGCGAAAAAAGGACGGUCGAGUUCAACGACUGGAAG
-(((.((((((((.(((((((((....((((...)))).((((((.....))))..)))))))........((((..........))))..........)))))))))))).)))..... ( -32.10)
>DroSec_CAF1 6347 119 - 1
-AGUGGUUGAAUUAUGGCAGCUUGUUGGCAUAACAUGCACGUGCCUGCAAGGCAGUCGAGGCUAGAGGAAAUCGCAUAUAAUGAGGCGAAAAAAGGACGGUCGAGUUCAACGACUGGAAG
-(((.((((((((.((((.((((((.(((((.........))))).)))).)).)))).((((........((((..........)))).........)))).)))))))).)))..... ( -33.23)
>DroSim_CAF1 11033 119 - 1
-AGUGGUUGAAUUAUGGCAGCUUGUUGGCAUAACAUGCACGUGCCUGCAAGGCAGUCGAGGCUAGAGGAAAUCGCAUAUAAUAAGGCGAAAAAAGGACGGUCGAGUUCAACGACUGGCAG
-(((.((((((((.((((.((((((.(((((.........))))).)))).)).)))).((((........((((..........)))).........)))).)))))))).)))..... ( -33.23)
>DroEre_CAF1 4388 119 - 1
-AGUGGUUGAAUUAUGGCAGCUUGUUGGCAUAACAUGCACGCGCCUGUAAGGCAGUCGAGGCUGGAGGAACUCGCCUGUAGUACAGCGAAAAAGGCACGGUCGAGUUCAACGACUGGAAA
-(((.((((((((.((((.(((....)))....(.(((...(((.((((..((((.((((..........)))).))))..)))))))......))).))))))))))))).)))..... ( -41.40)
>DroYak_CAF1 2822 120 - 1
GAGUAGUUGAAUUAUGACAGCUUGUUGGCAUAACAUGCACGUUCCUGUAAGGCAGUCGAGGCUAUAGGAAAUCGCAUAUAAUAAGGCGAAGGAAGGACGGUCGAGUUCAACGACUGGGAA
.(((.((((((((.((((.((.(((((...))))).)).((((((((((.(.(......).))))))))..((((..........)))).......))))))))))))))).)))..... ( -33.10)
>consensus
_AGUGGUUGAAUUAUGGCAGCUUGUUGGCAUAACAUGCACGUGCCUGUAAGGCAGUCGAGGCUAGAGGAAAUCGCAUAUAAUAAGGCGAAAAAAGGACGGUCGAGUUCAACGACUGGAAG
.(((.((((((((.(((((((((....((((...)))).((.(((.....)))...)))))))........((((..........))))..........)))))))))))).)))..... (-30.14 = -30.18 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:50 2006