Locus 1169

Sequence ID 2R_DroMel_CAF1
Location 4,633,655 – 4,633,751
Length 96
Max. P 0.688321
window2047

overview

Window 7

Location 4,633,655 – 4,633,751
Length 96
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 85.35
Mean single sequence MFE -21.40
Consensus MFE -18.42
Energy contribution -19.18
Covariance contribution 0.75
Combinations/Pair 1.11
Mean z-score -1.55
Structure conservation index 0.86
SVM decision value 0.32
SVM RNA-class probability 0.688321
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4633655 96 - 20766785
AAAAAUAUAACAUACUUAGAAUGCUACAAUACA---------CUUGUGGCGCAUUAAGUUAACUUAACAGGCCAAGUCUAAUUCUUUGGGUCGCCUAAUGAU-AUU
..........(((((((((..((((((((....---------.))))))))..)))))).........((((....(((((....)))))..)))).)))..-... ( -19.50)
>DroSec_CAF1 4642 106 - 1
GAAAAUAUAACAUACUUAGAGUGCUACAAUACAGGUCAACGAAUUGUGGCGUAUUAAGUUAACUUAACAGGCCAAGUCUAAUUCUUUGGGUCGCCUAAAGAUUAUC
.............((((((..(((((((((...(.....)..)))))))))..)))))).........((((...))))...((((((((...))))))))..... ( -22.90)
>DroSim_CAF1 4643 103 - 1
GAAAAUAUAACAUACUUAGAGUGCUACAAUACAGGUCAACGAAUUGUGGCAUAUUAAGUUAACUUAACAGGCCAAGUCUAAUUCUUUGGGUCGCCUAAAGAUU---
.............((((((.((((((((((...(.....)..)))))))))).)))))).........((((...))))...((((((((...))))))))..--- ( -24.60)
>DroYak_CAF1 4755 105 - 1
GAAAAUAUAACAUACUUAGAAUGCUACAAUAUUAGCCAAAGAAUUCUGGCGAUAUGAGUAAAUUUAACAGGCCAAGUCUAAUUCUUUGGGUCGCCUAAAGAU-AUC
.....................((((...(((((.((((........))))))))).))))........((((...))))...((((((((...)))))))).-... ( -18.60)
>consensus
GAAAAUAUAACAUACUUAGAAUGCUACAAUACAGGUCAACGAAUUGUGGCGUAUUAAGUUAACUUAACAGGCCAAGUCUAAUUCUUUGGGUCGCCUAAAGAU_AUC
.............((((((..(((((((((.(........).)))))))))..)))))).........((((...))))...((((((((...))))))))..... (-18.42 = -19.18 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:08 2006