Locus 1168

Sequence ID 2R_DroMel_CAF1
Location 4,632,222 – 4,632,325
Length 103
Max. P 0.696953
window2046

overview

Window 6

Location 4,632,222 – 4,632,325
Length 103
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 81.55
Mean single sequence MFE -43.73
Consensus MFE -27.43
Energy contribution -28.43
Covariance contribution 1.00
Combinations/Pair 1.11
Mean z-score -2.00
Structure conservation index 0.63
SVM decision value 0.34
SVM RNA-class probability 0.696953
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4632222 103 + 20766785
UCCCUCCUGGAAUCCCUGGCUGCUGCGGUCGCGGAUCAAAAGCACUUCCAACUGUUGGAUCUGGCUGCGGUUGCGGCUGCUGCAGCUGCCACGGCGU------CCUCCG
........(((..((.((((.((((((((..((((((...((((........)))).))))))(((((....))))).)))))))).)))).))..)------)).... ( -44.50)
>DroPse_CAF1 3807 109 + 1
ACUCUACUGGAAUCCCUGGCUGCUGCGGUGGCGGAUCAAAAGCACUUUCAACUGUUGGAUCUGGCUGCAGUUGCGGCUGCUGCUGCUGCCACAGCGUCAGCGUCGUCCG
........(((..(.(((((.((((.((..(((((((...((((........)))).)))))(((.(((((....))))).)))))..)).))))))))).)...))). ( -46.40)
>DroGri_CAF1 4771 94 + 1
AGUCUAUUGGAGUCCCUGGCUGCUGCAGUGGCGGACCAAAAGCAUUUUCAACUCUUGGAUCUCGCUGCUGUGGCGGCCGCUGCUGCC------------G---CCUCAG
........(((((...(((((((..(((..(((((((((.((.........)).)))).)).)))..)))..)))))))..))).))------------.---...... ( -40.00)
>DroMoj_CAF1 4594 106 + 1
AGUCUAUUGGAGUCUCUCGCCGCAGCAGUUGCGGAUCAAAAGCAUUUUCAACUCUUGGAUCUGGCUGCAGUAGCAGCCGCUGCUGCUGCCACAGCGUCUG---CCUCAG
.........(((.(...(((.((((((((.(((((((...((.........))....)))))((((((....)))))))).))))))))....)))...)---.))).. ( -40.00)
>DroAna_CAF1 3344 106 + 1
ACUCUUCUGGAGUCCCUGGCGGCCGCGGUUGCGGAUCAAAAGCACUUCCAACUGUUGGAUCUGGCUGCAGUUGCGGCUGCUGCUGCUGCCACGGCCUCGG---CAUCGG
.........(((.((.(((((((.(((((..((((((...((((........)))).))))))(((((....))))).))))).))))))).)).)))..---...... ( -45.10)
>DroPer_CAF1 3800 109 + 1
ACUCUACUGGAAUCCCUGGCUGCUGCGGUGGCGGAUCAAAAGCACUUUCAACUGUUGGAUCUGGCUGCAGUUGCGGCUGCUGCUGCUGCCACAGCGUCAGCGUCGUCCG
........(((..(.(((((.((((.((..(((((((...((((........)))).)))))(((.(((((....))))).)))))..)).))))))))).)...))). ( -46.40)
>consensus
ACUCUACUGGAAUCCCUGGCUGCUGCGGUGGCGGAUCAAAAGCACUUUCAACUGUUGGAUCUGGCUGCAGUUGCGGCUGCUGCUGCUGCCACAGCGUC_G___CCUCCG
........((....))((((.((.(((((..((((((...((((........)))).))))))(((((....))))).))))).)).)))).................. (-27.43 = -28.43 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:07 2006