Locus 1167

Sequence ID 2R_DroMel_CAF1
Location 4,630,756 – 4,630,852
Length 96
Max. P 0.500000
window2045

overview

Window 5

Location 4,630,756 – 4,630,852
Length 96
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 76.75
Mean single sequence MFE -35.60
Consensus MFE -18.79
Energy contribution -20.29
Covariance contribution 1.51
Combinations/Pair 1.44
Mean z-score -1.65
Structure conservation index 0.53
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4630756 96 + 20766785
UAAGCGUCGUCCGCCCGCCAAGCAAGCCGUCGCCAGUUCCACGUCGAACGGC------A---GCGGUGGCGGCCAACGUGCCUAUACCCCGGCACAGCAGCCCCA
...((((.(.(((((.((...))..(((((.(((.((((......)))))))------.---)))))))))).).))(((((........))))).))....... ( -38.80)
>DroPse_CAF1 1873 99 + 1
CAAGCGUCGUCCACCUGCAAAGCAAGCCGCCGCUAGUUCCACUGCCAAUGGU------AAUGGUGGUGGCGGCCAACGUGCCUAUACCCCGGCACAGCAGGCCCA
.............(((((.......((((((((((...(((.((((...)))------).)))))))))))))....(((((........))))).))))).... ( -42.80)
>DroEre_CAF1 2258 96 + 1
UAAGCGUCGUCCGCCUGCCAAGCAAGCCGUCGCCAGCUCCACGUCGAACGGU------A---GCGGUGGCGGCCAACGUGCCUACACUCCGGCACAGCAGCCCCA
...(((.....)))((((.......(((((((((.(((.(.((.....))).------)---)))))))))))....(((((........))))).))))..... ( -38.20)
>DroMoj_CAF1 3171 96 + 1
CAAGCGGCGACCCCCAGCUAAACAAGCGAUUGCCACGUCCACAUCGAACGGA------A---CGGGCGCAGUUCAACGUGCCUACGCCUCGUCGCAGCAGCCACA
...((.(((((.....(((.....)))((..((..(((((.........)).------)---))(((((........)))))...)).))))))).))....... ( -26.50)
>DroAna_CAF1 1988 90 + 1
CAAGCGUCGUCCUCCUGCUAAACAAGCUAUCGCCAGUUCCACGUCGAACGGA------A---GC------GGCCAACGUGCUUACACUCCGGCCCAGCAACCGCA
...(((..((.....((((......(((....((.((((......)))))).------)---))------((((...(((....)))...)))).))))))))). ( -21.90)
>DroPer_CAF1 1872 105 + 1
CAAGCGUCGUCCACCUGCAAAGCAAGCCGCCGCUAGUUCCACUGCCAAUGGUAAUGGUAAUGGUGGUGGCGGCCAACGUGCCUAUACCCCGGCACAGCAGGCCCA
.............(((((...((..((((((((((...(((.((((...)))).)))...)))))))))).))....(((((........))))).))))).... ( -45.40)
>consensus
CAAGCGUCGUCCACCUGCAAAGCAAGCCGUCGCCAGUUCCACGUCGAACGGU______A___GCGGUGGCGGCCAACGUGCCUACACCCCGGCACAGCAGCCCCA
..............((((.......(((((((((..............................)))))))))....(((((........))))).))))..... (-18.79 = -20.29 +   1.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:06 2006