| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,627,517 – 4,627,621 |
| Length | 104 |
| Max. P | 0.602562 |
| Location | 4,627,517 – 4,627,621 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 72.57 |
| Mean single sequence MFE | -35.00 |
| Consensus MFE | -21.32 |
| Energy contribution | -21.27 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602562 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4627517 104 - 20766785 CCACAAGAUUUAUAUUGAUCUCGUGGGUCCUGUACUCAGGGCUGUCGUGCUCCUGCUCAGCGCCAACAGGGGAGGGUGGCGGGUUGGACACUGAAAU-----------AG-UCAAA ((((.(((((......))))).))))((((((....))))))((((..(((((..(((..(.((....)).).)))..).))))..)))).......-----------..-..... ( -36.00) >DroVir_CAF1 4249 100 - 1 CCACGACAUUAAUAUUUAUCUCGUGUGUCUUAUAUUCUGGACUGCUCUGUUCCUG------GCCAACAGGCGAAGGUGGCGGAUUGGAUACUAUG---------AGAAAA-AAGGA .(((((.((........)).)))))..(((((((.((..(.(((((.....(((.------(((....)))..))).))))).)..))...))))---------)))...-..... ( -27.10) >DroGri_CAF1 4143 108 - 1 CCACCAGAUUAAUAUUGAUCUCAUGGGUCUUAUACUCGGGACUGCUCUGCUCCUG------GCCAACUGGCGAAGGCGGCGGAUUGGACACUAAUUGGACACGCA-AAAG-AAAGC (((..((((((....))))))..)))(((((......)))))((((((((((((.------(((....)))..))).)))))).((..((.....))..)).)))-....-..... ( -30.50) >DroEre_CAF1 4051 110 - 1 CCACAAGAUUUAUGUUUAUCUCGUGGGUCCUGUACUCAGGGCUAUCCUGCUCCUGUCCAGCACCAACAGGGGAGGGUGGCGGGUUGGACACUGAAAAC------AGAGAUAUCAAA ((((.((((........)))).))))(((((((..((((.((((((((.(((((((.........))))))))))))))).(......).))))..))------)).)))...... ( -41.00) >DroYak_CAF1 4099 109 - 1 CCACAAGGUUAAUGUUGAUCUCGUGGGUCCUGUACUCAGGGCUAUCCUGCUCCUGUCCAGCACCAACAGGGGAGGGUGGCGGGUUGGACACUGAACAA------AGAGAUA-CAAA ((((.((((((....)))))).))))((((...((((...((((((((.(((((((.........))))))))))))))))))).)))).........------.......-.... ( -40.50) >DroAna_CAF1 3936 108 - 1 CGACGAGGUUAAUGUUGAUCUCGUGGGCCUUGUACCCUGGACUGUCCUGUUCCUGUCCAGCUCCAACAGGGGACGGCGGCGGGUUGGAAACUAUACGA------AGAGAG-UU-UA ..(((((((((....)))))))))(((.......)))((((((.((((((..((((((..((.....)).))))))..))))((.(....)...))..------.)).))-))-)) ( -34.90) >consensus CCACAAGAUUAAUAUUGAUCUCGUGGGUCCUGUACUCAGGACUGUCCUGCUCCUGUCCAGCGCCAACAGGGGAGGGUGGCGGGUUGGACACUAAAAA_______AGAGAG_UCAAA ((((.(((((......))))).))))((((...((((..(.(((((...((((((...........))))))..)))))))))).))))........................... (-21.32 = -21.27 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:01 2006