Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,621,270 – 4,621,363 |
Length | 93 |
Max. P | 0.622403 |
Location | 4,621,270 – 4,621,363 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 92.25 |
Mean single sequence MFE | -29.45 |
Consensus MFE | -24.27 |
Energy contribution | -25.77 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.82 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4621270 93 + 20766785 AACGGGAGCGGAGAAAAGGCAGCACUCGGUUGCUGACAGUGAUGUCACAGCCCGGCAGCAAAGAAAAGCACACUGAGCUGCUACUGAUGGGAG ..((....)).......((((((.((.(((((.(((((....)))))))))).))..((........)).......))))))........... ( -28.20) >DroSec_CAF1 10910 93 + 1 AACGGGAGCGGAGAAAAGGCAGCACUCGGUUGCUGACAGUGAUGUCACAGCCCGGCAGCAAAGAAAAGCACACUGAGCUGCUACUGGUGGGAG ..((....)).......((((((.((.(((((.(((((....)))))))))).))..((........)).......))))))........... ( -28.20) >DroEre_CAF1 11070 90 + 1 AACGGGACCGGAGAAAAGGCAGCACUUGGUUGGUGACAGUGAUGUCACAGCCCGGCAACAAGGAAAAGCACACUGAGCUGCU---GUUAGGAG ..((....)).......(((((((((..((((((((((....))))))..((.(....)..)).....)).))..)).))))---)))..... ( -28.30) >DroYak_CAF1 10746 90 + 1 AACGGGAGCGGUGAAAAGGCAGCACUCGGUUGCUGACAGUGAUGUCACAGCCCGGCAACAACGAAAAGCACACUGAGCUGCU---GCUAGGAG ..((....)).......(((((((((((((((((((((....)))).......(....).......)))).)))))).))))---)))..... ( -33.10) >consensus AACGGGAGCGGAGAAAAGGCAGCACUCGGUUGCUGACAGUGAUGUCACAGCCCGGCAACAAAGAAAAGCACACUGAGCUGCU___GAUAGGAG ..((....)).......((((((....(((((.(((((....))))))))))..((...........)).......))))))........... (-24.27 = -25.77 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:58 2006