| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,617,847 – 4,617,948 |
| Length | 101 |
| Max. P | 0.930154 |
| Location | 4,617,847 – 4,617,948 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 70.31 |
| Mean single sequence MFE | -26.63 |
| Consensus MFE | -13.74 |
| Energy contribution | -14.89 |
| Covariance contribution | 1.15 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.930154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4617847 101 + 20766785 GU----UUAGUGUAAAGUUGGGCUUACUCUUCGCGGAAUAUCUAA-AAUUUUACCCGAUAUCUGUGAGGCGUGAGCCCGAUCGCUAGCCUUAAGAAGGAAUGGAGU ..----((((((....(((((((((((.(((((((((.((((...-..........))))))))))))).)))))))))))))))))(((.....)))........ ( -37.72) >DroPse_CAF1 7493 88 + 1 GUAUAUCUAGCGUAAA-UUGGGUUUGCACGUCUCAA-----------AU-----CGAAUAUCUGUUGCGUUCAAACC-CAUCCGUAGCCUUAAGAAUAAAAGAGAU ....((((.((.....-.((((((((.((((..((.-----------..-----........))..)))).))))))-))......))(((........))))))) ( -19.40) >DroSec_CAF1 7519 101 + 1 GU----UUAGUGUAAAGUUGGACUUACUCGUCGCGGAAUAUCUAA-AGUUUUACGCGAUAUCUGUGACGCGUAAGCCCGAUCGCUAGCCUUAAGAUGGAAUGGAGU ..----((((((....(((((.(((((.(((((((((.((((...-..........))))))))))))).))))).)))))))))))((.......))........ ( -31.72) >DroEre_CAF1 7602 101 + 1 GU----UUAGUGUAAAGUUGGGCUUACUCGUCUCGAAAUAUCUUA-AAUUGUAAUCGAUAUUUGGGACGCGUAAGUCUUAUCGCUAGCCUUAAGAUGGAAUGGAGU ..----((((((.......((((((((.((((((.(((((((...-..........))))))))))))).))))))))...))))))((.......))........ ( -28.82) >DroYak_CAF1 7370 101 + 1 GU----UUAGUGUCAAGUUGGGCUUGCUCGUCUCGGAAUAUCUAAAAAUUUUACCCGAUAUUUGUGACGCUCAAGCCUUAUCGCUAGCCUUAAGAUG-AAUGGAGU ..----((((((.......(((((((..((((.((.((((((..............)))))))).))))..)))))))...))))))..........-........ ( -24.64) >DroPer_CAF1 7496 88 + 1 GUAUAUCUAGUGUAAA-UUGGGUUUGCACGUCUCAA-----------AU-----CGAAUAUCUGUUACGUUCAAACC-CAUCCGUAGCCUUAAGAAUAAAAGAGAU ....((((.((.....-.((((((((.((((..((.-----------..-----........))..)))).))))))-))......))(((........))))))) ( -17.50) >consensus GU____UUAGUGUAAAGUUGGGCUUACUCGUCUCGAAAUAUCUAA_AAUUUUACCCGAUAUCUGUGACGCGCAAGCC_CAUCGCUAGCCUUAAGAAGGAAUGGAGU ......((((((.......(((((((..((((.((((.((((..............)))))))).))))..)))))))...))))))................... (-13.74 = -14.89 + 1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:57 2006