Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,371,671 – 1,371,790 |
Length | 119 |
Max. P | 0.800841 |
Location | 1,371,671 – 1,371,790 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.24 |
Mean single sequence MFE | -20.73 |
Consensus MFE | -16.73 |
Energy contribution | -17.23 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.81 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.800841 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1371671 119 + 20766785 AAAAUGUAAAGCCACAUUAAUCACAGUUGA-AGGACUAAAGUGCACACAAUAAAUUUGCAAAUACUUGCAAUAACUGUAAUCAACACACUUGCCAAUCCCAGGUGGCUAGAGCAAACAGC ....(((..((((((.......(((((((.-.(.((....)).)...........((((((....)))))))))))))...(((.....)))..........))))))...)))...... ( -22.60) >DroSec_CAF1 3838 119 + 1 AAAAUGUAAAGCCACAUUAAUCACAGUUGA-AGGACUAAAGUGCACACAAUAAAUUUGCAAAUACUUGCAAUAACUGUAAUCAACACACUUGCCAAUCCCACGCGGCCAGAGCAAACAGC ..(((((......)))))....(((((((.-.(.((....)).)...........((((((....)))))))))))))..........((.(((..........))).)).......... ( -18.80) >DroEre_CAF1 2007 108 + 1 AAAAUGUAAAGCCACAUUAAUCACAGUUGAAAAGACUAAAGUGCACACAAUAAAUUUGCAAAUACUUGCAAUAACUGUAAUCAACACACUUGCCAAUCCCACGUGGCU------------ .........((((((.......(((((((...........((....)).......((((((....)))))))))))))...(((.....)))..........))))))------------ ( -19.70) >DroYak_CAF1 1097 120 + 1 AAAAUGUAAGGCCACAUUAAUCACAGUUGAAAGGACUAAAGUGCACAGAAUAAAUUUGCAAAUACUUGCAAUAACUGUAAUCAACACACUUGCCAAUCCCACAUGGCUUGAGCAAACAGC ..(((((......))))).......(((((..(.((....)).)((((.......((((((....))))))...))))..)))))....(((((((.((.....)).))).))))..... ( -21.80) >consensus AAAAUGUAAAGCCACAUUAAUCACAGUUGA_AGGACUAAAGUGCACACAAUAAAUUUGCAAAUACUUGCAAUAACUGUAAUCAACACACUUGCCAAUCCCACGUGGCUAGAGCAAACAGC ..(((((......)))))....(((((((...(.((....)).)...........((((((....))))))))))))).............((((........))))............. (-16.73 = -17.23 + 0.50)
Location | 1,371,671 – 1,371,790 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.24 |
Mean single sequence MFE | -28.45 |
Consensus MFE | -25.96 |
Energy contribution | -25.90 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -1.40 |
Structure conservation index | 0.91 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1371671 119 - 20766785 GCUGUUUGCUCUAGCCACCUGGGAUUGGCAAGUGUGUUGAUUACAGUUAUUGCAAGUAUUUGCAAAUUUAUUGUGUGCACUUUAGUCCU-UCAACUGUGAUUAAUGUGGCUUUACAUUUU ((..(..((.((.((((........)))).)).))(((((((((((((.((((((....))))))..(((..((....))..)))....-..))))))))))))))..)).......... ( -28.40) >DroSec_CAF1 3838 119 - 1 GCUGUUUGCUCUGGCCGCGUGGGAUUGGCAAGUGUGUUGAUUACAGUUAUUGCAAGUAUUUGCAAAUUUAUUGUGUGCACUUUAGUCCU-UCAACUGUGAUUAAUGUGGCUUUACAUUUU ((.....))...(((((((((((((((..(((((..(.....(((((..((((((....))))))....))))))..))))))))))))-(((....)))...))))))))......... ( -30.50) >DroEre_CAF1 2007 108 - 1 ------------AGCCACGUGGGAUUGGCAAGUGUGUUGAUUACAGUUAUUGCAAGUAUUUGCAAAUUUAUUGUGUGCACUUUAGUCUUUUCAACUGUGAUUAAUGUGGCUUUACAUUUU ------------((((((((.(((..(((.((.((((....((((((..((((((....))))))....)))))).)))).)).)))..)))...........))))))))......... ( -27.10) >DroYak_CAF1 1097 120 - 1 GCUGUUUGCUCAAGCCAUGUGGGAUUGGCAAGUGUGUUGAUUACAGUUAUUGCAAGUAUUUGCAAAUUUAUUCUGUGCACUUUAGUCCUUUCAACUGUGAUUAAUGUGGCCUUACAUUUU (((.(((((.(((.((.....)).)))))))).(..((((((((((((.((((((....)))))).........(..(......)..)....))))))))))))..)))).......... ( -27.80) >consensus GCUGUUUGCUCUAGCCACGUGGGAUUGGCAAGUGUGUUGAUUACAGUUAUUGCAAGUAUUUGCAAAUUUAUUGUGUGCACUUUAGUCCU_UCAACUGUGAUUAAUGUGGCUUUACAUUUU .............((((((((((((((..(((((..(.....(((((..((((((....))))))....))))))..)))))))))))).(((....)))...))))))).......... (-25.96 = -25.90 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:49 2006