Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,609,178 – 4,609,298 |
Length | 120 |
Max. P | 0.613844 |
Location | 4,609,178 – 4,609,298 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -42.80 |
Consensus MFE | -26.17 |
Energy contribution | -25.95 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.31 |
Mean z-score | -1.77 |
Structure conservation index | 0.61 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613844 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4609178 120 - 20766785 UGGCUUCGUUUCCUCACAGCAGCCGUGCAAGGCGUGCGUCCUUCUCGAGGGUCUAAAUAGAGGAUUGCCGAAGCUGGGCAUAGGCAAGAAGUCGAAGGGCGAGCGAAUGAUUGCCAAGCA ((((.((((((.(((...((((((......))).)))(((((((.......(((....)))((.(((((...((...))...)))))....)))))))))))).))))))..)))).... ( -43.40) >DroVir_CAF1 16156 120 - 1 CAGCUUCGUUUCCUCACAGCAGCCGUGCAAGGCGUGCGUGCUGCUGGAGGGACUCAAUCGCGGCCUGCCCAAACUGGGCAUUGGCAAGAAAUCAAAGGGUGAUCGCAUGAUUGCCAAACA .........((((((.(((((((((..(.....)..)).))))))))))))).....((...((((((((.....)))))..)))..))........((..(((....)))..))..... ( -50.70) >DroGri_CAF1 13755 120 - 1 CGGCUUCGUUUCCUCUCAGCAGCCAUGCAAGGCAUGCGUUCUGCUGGAGGGACUUAAUCGAGGUUUGCCCAAACUGGGCAUUGGCAAGAAAUCGAAAGGUGAUCGCAUGAUUGCCCAGCA .(((((((.((((((.((((((..(((((.....))))).))))))))))))......)))))))........(((((((...((.....(((....)))....)).....))))))).. ( -46.00) >DroWil_CAF1 16338 120 - 1 CGGGUUCGUCUCCUCGCAGCAGCCAUGUAAGGCCUGCGUCUUGCUCGAGGGAUUGAAUCGAGGACUACCAAAGUUGGGAAUUGGUAAGAAGUCCAAAGGUGAUCGAAUGAUUGCCGAACA ..((((((..((((((.(((((..(((((.....))))).)))))))))))..))))))..((((((((((.........)))))....)))))...((..(((....)))..))..... ( -41.30) >DroMoj_CAF1 13368 120 - 1 UGGCUUUGUCUCCUCGCAGCAGCCAUGCAAGGCAUGUGUGCUCCUAGAAGGACUUAACCGAGGGCUACCCAAACUGGGUAUAGGCAAGAAAUCAAAGGGCGAUCGAAUGAUUGCUAAACA ....((((((((((((..(((..(((((...)))))..)))(((.....)))......)))))..(((((.....))))).))))))).........(((((((....)))))))..... ( -38.30) >DroAna_CAF1 7749 120 - 1 UGGCUUUGUCUCCUCGCAGCAACCGUGCAAGGCCUGUGUGCUGCUCGAAGGACUGAACAGAGGGCUUCCCAAACUGGGAAUCGGCAAAAAAUCCAAAGGCGAUCGCAUGAUAGCUAAGCA ..((((((((.((((((((((..((.((...)).))..))))))((....)).......))))(.(((((.....))))).))))))).........(((.(((....))).)))..)). ( -37.10) >consensus CGGCUUCGUCUCCUCGCAGCAGCCAUGCAAGGCAUGCGUGCUGCUCGAGGGACUGAAUCGAGGACUGCCCAAACUGGGCAUUGGCAAGAAAUCAAAAGGCGAUCGAAUGAUUGCCAAACA ..(((......((((...((((((......))).)))((.((......)).))......))))..(((((.....)))))..)))............(((((((....)))))))..... (-26.17 = -25.95 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:54 2006