Locus 1157

Sequence ID 2R_DroMel_CAF1
Location 4,608,869 – 4,608,988
Length 119
Max. P 0.711082
window2032

overview

Window 2

Location 4,608,869 – 4,608,988
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.07
Mean single sequence MFE -30.60
Consensus MFE -24.12
Energy contribution -22.85
Covariance contribution -1.27
Combinations/Pair 1.40
Mean z-score -1.78
Structure conservation index 0.79
SVM decision value 0.38
SVM RNA-class probability 0.711082
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4608869 119 + 20766785
CACAGACACCAUAUAAAGGUCAAGCGCUGGCAAUCUUCUUCAAUAUUCUUUUGGAGAUAGAGCGUCUUGUUUGACUGGUUAUGGGCCCUGGUUAAAAACUUGGCACUGAG-CUUCAUAAU
..(((...(((((....(((((((((..(((..((((((((((.......))))))).)))..))).)))))))))...)))))(((..(((.....))).))).)))..-......... ( -37.50)
>DroVir_CAF1 15839 119 + 1
CACAGACACCAUAUAAAAGUUAAGCUCUGGCAAACUUCUUCAAUAUUUUUUUGAAGUAAGCGAGUCUUGCUUAGCCGGUUAUGGACCCUGGUUAAUAAAUUGGCACUGAG-UCUUACACU
...((((.............(((((...(((...(((((((((.......)))))).)))...)))..)))))(((((((...(((....)))....))))))).....)-)))...... ( -29.00)
>DroPse_CAF1 8037 119 + 1
CACAGACACCAUAUAAAAGUUAAGUGUAGACAAACUUCUUCAAUAUUCUUUUGGAGAUAGGGAAUCUCGCUUGACCGGGUAUGGACCAUGGUUAAAAAAUUGGCACUGAG-CUUCAUAUA
..(((...((((((....((((((((.(((....(((((((((.......))))))).))....)))))))))))...))))))......(((((....))))).)))..-......... ( -29.90)
>DroGri_CAF1 13429 119 + 1
CACAGACACCAUAUAAAAGCUAAGCGCUGACAAUCUGCUUCAAUAUUUUUUUGGAGUUUGGGAGUCUUGCUUAGCCGGUUAUGGACCCUGGUUAAUAAAUUGGCACUGAG-UCUUAUACC
...((((.(((((.....((((((((..(((..((.(((((((.......)))))))..))..))).))))))))....)))))...(..(((....)))..)......)-)))...... ( -33.20)
>DroMoj_CAF1 13058 120 + 1
CACUGACAGCAUAUAAACGUUAAGCGCUGACAAACUUCUUCAAUAUUCUUUUGAUGUAAGGGAGUCUUGCUUAACCGGUUAUGUCCCAUGGUUAAUAAUUUGGCACUGAGCUCUUAUAAU
...(((.(((((((((..((((((((..(((...((((.((((.......)))).).)))...))).))))))))...))))))..((..(((((....)))))..)).))).))).... ( -24.40)
>DroPer_CAF1 8259 119 + 1
CACAGACACCAUAUAAAAGUUGGGUGUAGACAAACUUCUUCAAUAUUCUUUUGGAGAUAGGGAAUCUCGCUUGACCGGGUAUGGAUCAUGGUUAAAAAAUUGGCACUGAG-CUUCAUAUA
..(((...((((((....((..((((.(((....(((((((((.......))))))).))....)))))))..))...))))))......(((((....))))).)))..-......... ( -29.60)
>consensus
CACAGACACCAUAUAAAAGUUAAGCGCUGACAAACUUCUUCAAUAUUCUUUUGGAGAUAGGGAGUCUUGCUUAACCGGUUAUGGACCAUGGUUAAAAAAUUGGCACUGAG_CCUCAUAAU
..(((...(((((.....(((((((...(((.....(((((((.......)))))))......)))..)))))))....)))))......(((((....))))).)))............ (-24.12 = -22.85 +  -1.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:53 2006