Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,603,034 – 4,603,130 |
Length | 96 |
Max. P | 0.661181 |
Location | 4,603,034 – 4,603,130 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.05 |
Mean single sequence MFE | -24.58 |
Consensus MFE | -10.08 |
Energy contribution | -11.00 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.33 |
Mean z-score | -1.79 |
Structure conservation index | 0.41 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4603034 96 - 20766785 A--AAUGU-------ACUC---------------AAGCCAUGGAAAUGAUUUCAUUGCUUUGAAUGAGAUUAGUUCUAUGAGGACAUGUACCCAGACAUCCACACCUUUAGGCCUCCAAU .--.....-------....---------------..(((((((((.((((((((((......)))))))))).))))))..(((..(((......)))))).........)))....... ( -21.70) >DroSec_CAF1 3177 101 - 1 A--AAUGUCG--GAAACUA---------------GAGCCAUGGAAAUGAUUUCAUUGCUUUAAAUGAGAUUCGUUCUAUGUGGACAUGUACCCAGAUACCCACACCUUUAGGCCUCCAAU .--......(--((..(((---------------(((.(((((((..(((((((((......)))))))))..)))))))(((........)))...........))))))...)))... ( -26.20) >DroSim_CAF1 3180 101 - 1 A--AAUUUCG--GAGACUA---------------GAGCCAUGGAAAUGAUUUUAUUGCUUUAAAUGAGAUUCGUUCUAUGUGGACAUGUACCCAGAUACCCAUACCUUUAGGCCUCCAAU .--......(--(((.(((---------------(((..((((.((((((((((((......))))))).))))).(((.(((........))).))).))))..))))))..))))... ( -27.70) >DroEre_CAF1 3194 116 - 1 A--AAUGUCG--GAAAGUAAUUAAGUAAGUAAUUGAGUAAUAGAUAUGAUUUCAUGGCUUUGAAUGAAAUCCUUUCUAUGACGACAUGCACCCAGGUAUCCACACCUUCAGGCCUCCAGU .--.((((((--.....((((((......))))))....(((((...((((((((........))))))))...)))))..))))))((....((((......))))....))....... ( -25.40) >DroYak_CAF1 3197 108 - 1 AAUAAUGUCUUUGGUCCUAACUACCAAA-------AG---U--GGAAGAUUUCAGGGCUUUAAAUGAGAUUCUUUCUAUGACGAUAUCUACCUAGAUAUCCAUACCGCCAGGCCUCCAAU ......(((((((((.......))))))-------.(---(--(((((((((((..........)))))))..)))))))))(((((((....)))))))....((....))........ ( -21.90) >consensus A__AAUGUCG__GAAACUA_______________GAGCCAUGGAAAUGAUUUCAUUGCUUUAAAUGAGAUUCGUUCUAUGAGGACAUGUACCCAGAUAUCCACACCUUUAGGCCUCCAAU ......................................(((((((..(((((((((......)))))))))..)))))))........................((....))........ (-10.08 = -11.00 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:47 2006