Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,593,749 – 4,593,849 |
Length | 100 |
Max. P | 0.874279 |
Location | 4,593,749 – 4,593,849 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 76.53 |
Mean single sequence MFE | -31.18 |
Consensus MFE | -20.47 |
Energy contribution | -21.50 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.06 |
Mean z-score | -1.59 |
Structure conservation index | 0.66 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.874279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4593749 100 - 20766785 GAUAAGGAUGCCCAGGGAACUGGGAUUGGCAAAGCCGCAGAUGGCGAAUGUGGCGAUUCCAGCGCUGCGGGCCUACAAAAAUCGACCUCAA--ACGUUAGUU-- .....(...((((..((..(((((((((.((..((((....)))).....)).)))))))))..))..))))...)...............--.........-- ( -30.20) >DroPse_CAF1 29938 97 - 1 AAUGAGGAUGCCCAGGGAGCUGGGAUUGGCAAAGCCGCAGAUGGCAAACGUGGCGAUUCCUCCGCUGCGAGCCUAAAAU---U--CAUUGA--GGAUUAGUGAA (((((((((.(((((....))))))))(((...((((....))))...((..(((.......)))..)).))).....)---)--))))..--........... ( -32.50) >DroGri_CAF1 35865 96 - 1 AAUGAGUAUGCCCAGGGAGCUGGGAUUGGCGAAGCCACAAAUCGCAAAGGUGGCAAUGCCGGCGCUGCGAACCUGUGCA-UUA--CAUCA---AGGUCAGUU-- ..(((((((((.((((..((.(.(.((((((..(((((...........)))))..))))))).).))...)))).)))-.))--).)))---.........-- ( -33.80) >DroEre_CAF1 31815 100 - 1 GAUAAGGAUGCCCAAGGAACUGGGAUUGGCAAAGCCGCAGAUGGCGAAUGUGGCGAUUCCAGCGCUGCGGGCCUACGAUAAUUGAAAUUUA--UCUUUAGUU-- ..(((((((((((..((..(((((((((.((..((((....)))).....)).)))))))))..))..))))...(((...)))......)--))))))...-- ( -33.30) >DroAna_CAF1 31014 102 - 1 AAUCAGGAUACCCAAAGAACUGGGAUUGGCAAAGCCGCAAAUGGCAAAGGUGGCAAUUCCAGCACUGCGAGCCUACAAUGAUUAACAUAUUUUAGGAUAGUU-- .....((....))..((..(((((((((.((..((((....)))).....)).)))))))))..))((...((((.((((.......)))).))))...)).-- ( -24.80) >DroPer_CAF1 29859 97 - 1 AAUGAGGAUGCCCAGGGAGCUGGGAUUGGCAAAGCCGCAGAUGGCAAACGUGGCGAUUCCUCCGCUGCGAGCCUAAAAU---U--CAUUGA--GGAUUAGUGAA (((((((((.(((((....))))))))(((...((((....))))...((..(((.......)))..)).))).....)---)--))))..--........... ( -32.50) >consensus AAUGAGGAUGCCCAGGGAACUGGGAUUGGCAAAGCCGCAGAUGGCAAACGUGGCGAUUCCAGCGCUGCGAGCCUACAAU_AUU__CAUUAA__AGGUUAGUU__ ..........(((((....)))))...(((...((((....))))....(..(((.......)))..)..)))............................... (-20.47 = -21.50 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:45 2006