| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,593,377 – 4,593,486 |
| Length | 109 |
| Max. P | 0.778060 |
| Location | 4,593,377 – 4,593,486 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.28 |
| Mean single sequence MFE | -39.00 |
| Consensus MFE | -24.03 |
| Energy contribution | -24.20 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778060 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4593377 109 + 20766785 -----UGUAGACAGGACUCUUCGCUGCUGGACGCAGCGUCCAGUGGUGCCAGCAACGCCGUGCCCAUUGUUCUGGGCAUUAUCGCUAACAUAGUCGCCUUCGUCGCCUUCAUCG -----....((((((...((.(((..(((((((...)))))))..)))..(((......(((((((......)))))))....))).....))...)))..))).......... ( -35.60) >DroVir_CAF1 37631 114 + 1 UUAAUUUCAGCGAAGAUGCUUCCUUGUUGGAUGCCGCUUCGAGUGGCGCCUCCAAUGCCGUGCCCAUUGUACUGGGCAUUAUUGCCAACAUUGUGGCCUUUGUGGCAUUCGUUG .......(((((((...........((((((((((((.....))))))..))))))((((((((((......)))))))....((((......))))......))).))))))) ( -42.20) >DroGri_CAF1 35497 109 + 1 -----CAUAGCGAGGAUUCCUCUUUGCUGGAUGCCGCUUCUAGUGGCGCCUCAAAUGCCGUGCCCAUUGUUCUGGGCAUUAUUGCCAACAUUGUUGCAUUUGUGGCUUUCGUCG -----..(((((((((....)))))))))((((((((.....)))))(((.(((((((.(((((((......)))))))...((....)).....))))))).)))....))). ( -42.90) >DroMoj_CAF1 41458 109 + 1 -----UACAGCGAGGAUGCCUCCUUGCUGGAUGCCGCGUCCAGUGGCGCCUCCAAUGCCGUGCCCAUUGUCCUGGGCAUCAUUGCCAACAUUGUGGCCUUUGUUGCGUUCAUUG -----..(((((((((....)))))))))...(((((.....))))).....(((((.((((((((......)))))......((((......)))).......)))..))))) ( -41.70) >DroAna_CAF1 30648 109 + 1 -----UACAGACAGGACUCAUCUAUAUUGGAUGCCGCCUCCAGUGGAGCAAGCAAUGCCGUGCCCAUCGUCCUGGGCAUCAUCGCCAACAUUGUGGCCUUUGUGGCGUUCGUCG -----....(((.(((....))).....(((((((((((((...))))...........(((((((......)))))))....((((......))))....)))))))))))). ( -35.10) >DroPer_CAF1 29496 109 + 1 -----UACAGCCAGGACUCGUCCUUACUCGAUGCUGCGUCCAGCGGUGCCAGCAAUGCCGUGCCCAUUGUCCUGGGUAUCAUUGCCAAUAUCGUGGCUUUUGUAGCCUUCGUCG -----...((..((((....))))..))(((.((((((.(((.(((((...((((((..(((((((......)))))))))))))...))))))))....))))))..)))... ( -36.50) >consensus _____UACAGCCAGGACUCCUCCUUGCUGGAUGCCGCGUCCAGUGGCGCCACCAAUGCCGUGCCCAUUGUCCUGGGCAUCAUUGCCAACAUUGUGGCCUUUGUGGCCUUCGUCG ...........................((((.(((((.......((((.......))))(((((((......)))))))....((((......))))....))))).))))... (-24.03 = -24.20 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:44 2006