Locus 1150

Sequence ID 2R_DroMel_CAF1
Location 4,585,027 – 4,585,125
Length 98
Max. P 0.520778
window2022

overview

Window 2

Location 4,585,027 – 4,585,125
Length 98
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 87.18
Mean single sequence MFE -28.34
Consensus MFE -22.66
Energy contribution -22.66
Covariance contribution 0.00
Combinations/Pair 1.11
Mean z-score -1.44
Structure conservation index 0.80
SVM decision value -0.03
SVM RNA-class probability 0.520778
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4585027 98 - 20766785
UAAUGUUGACCACUAAUCUGGUCAGU----UAGCCGAGGAACGGCGAUAGCCGCUUAUCCCAAGAGCAAUCAUCCGACUUGGCGGAUAGUCAAACUACUUUU----
.....(((((((......))))))).----..((((((....(((....)))((((.......))))..........))))))((.(((.....)))))...---- ( -27.20)
>DroSec_CAF1 16410 101 - 1
UAAUGUUGACCACUAAUCUGGUCAGUUAGUUAGCCGAGGAACGGCGAUAGCCGCGUAUCCCAAGAGCAAUCAUCCGACUUGGCGGAUCGCCAA-AUACUUUU----
((((.(((((((......)))))))...))))((((((...((((....))))..........((....))......))))))((....))..-........---- ( -27.90)
>DroSim_CAF1 16781 101 - 1
UAAUGUUGACCACUAAUCUGGUCAGUUAGUUAGCCGAGGAACGGCGAUAGCCGCUUAUCCCAAGAGCAAUCAUCCGACUUGGCGGAUCGCCAA-CUACUUUU----
.....(((((((......))))))).(((((.((((((....(((....)))((((.......))))..........))))))((....))))-))).....---- ( -30.70)
>DroEre_CAF1 22972 101 - 1
UCAUUUUUACCACUAAUCUGGUCAGU----UAGCCGAGGGCCGGCGAUAGCUGCUUAUCCCAAGAGCAAUCAUCCCACUUGGCGGCUCGCCAA-CUACUUUUCGUU
..................((((.(((----(.((((((((..((.(((((....)))))))..((....))...)).)))))))))).)))).-............ ( -25.80)
>DroYak_CAF1 23107 99 - 1
UAAUUUUGACCACUAAUCUGGUCAGU----UAGCUGAGGGCCGGCGAUAGCUGCUUAUCCCAAGAGCAAUCAUCCGCCUUGG--GCAAGCCAA-CUACUUUUCGUU
......((((((......))))))((----(.(((.(((((.(..(((.(((.(((.....)))))).)))..).))))).)--)).)))...-............ ( -30.10)
>consensus
UAAUGUUGACCACUAAUCUGGUCAGU____UAGCCGAGGAACGGCGAUAGCCGCUUAUCCCAAGAGCAAUCAUCCGACUUGGCGGAUCGCCAA_CUACUUUU____
.....(((((((......))))))).......((((((...((((....))))..........((....))......))))))....................... (-22.66 = -22.66 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:43 2006