| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,369,209 – 1,369,325 |
| Length | 116 |
| Max. P | 0.725181 |
| Location | 1,369,209 – 1,369,325 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.09 |
| Mean single sequence MFE | -32.34 |
| Consensus MFE | -24.60 |
| Energy contribution | -24.24 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1369209 116 - 20766785 UAUUUAAUAUUUUUUCACUUAGCCAUAUAUUGAUGUUGAGUCCUGAGCUUUUAAGCAAACAGGCGACCAAAAGCCUGAAUUACAGCUGUCACCGUGUGGC----UGAAUGUGCUAUGUGU ......((((.....((.((((((((((..((((((((........(((....)))...(((((........))))).....)))).))))..)))))))----))).))....)))).. ( -33.60) >DroSec_CAF1 1843 119 - 1 UAUUUAAUAUUU-UUCACUUAGCCAUAUAUUGGUGUUGAGUCCCGAGCUUUUAAGCAAACAGGCGACCAAAAGCCUGAAUUACAGCUGUCACCGUGUGGCUGGCUGCAUGUGCUAUGCGU ............-......(((((((((...((((...(((.....(((....)))...(((((........))))).......)))..)))))))))))))((.((....))...)).. ( -32.30) >DroSim_CAF1 6312 120 - 1 UAUUUAAUAUUUUUUCACUUAGCCAUAUAUUGGUGUUGAGUCCCGAGCUUUUAAGCAAACAGGCGACCAAAAGCCUGAAUUACAGCUGUCACCGUGUGGCUGGCUGCAUGUGCUAUGCGU ...................(((((((((...((((...(((.....(((....)))...(((((........))))).......)))..)))))))))))))((.((....))...)).. ( -32.30) >DroEre_CAF1 358 116 - 1 UAUUUAAUAUUUUUUCACUUAGCCAUACAUUGGUGUUGAGUCCUGAGCUUUUAAGCAAACAGGCGACCAAAAGCCUGAAUUACAGCUGUCACCGUGUGGC----UGCAUGUGUUGUGUAC ......((((.....(((.(((((((((...((((...(((..((((((....)))...(((((........)))))..)))..)))..)))))))))))----))...)))..)))).. ( -33.60) >DroYak_CAF1 313 115 - 1 UAUUUAAUAUUUUUUCACUUAGCCAUAUAUUACUGGUGAGUCCUGAGCUUUUAAGCAAACAGGCGACCAAAAGCCUGAAUUACAGUUGUCACAGUGUGGC----UGCAUGUGUUAUGUA- ......((((.....(((.(((((((.....((((.(((...(((.(((....)))...(((((........))))).....)))...))))))))))))----))...)))..)))).- ( -29.90) >consensus UAUUUAAUAUUUUUUCACUUAGCCAUAUAUUGGUGUUGAGUCCUGAGCUUUUAAGCAAACAGGCGACCAAAAGCCUGAAUUACAGCUGUCACCGUGUGGC____UGCAUGUGCUAUGUGU .....................(((((((..((..((((........(((....)))...(((((........))))).....))))...))..)))))))....(((((.....))))). (-24.60 = -24.24 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:47 2006