| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,567,215 – 4,567,315 |
| Length | 100 |
| Max. P | 0.779091 |
| Location | 4,567,215 – 4,567,315 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 67.56 |
| Mean single sequence MFE | -31.73 |
| Consensus MFE | -9.94 |
| Energy contribution | -9.80 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.31 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4567215 100 - 20766785 GUGUG------------UUGGC---CCUUUGUUGUUUUCCCAGGC-CUCGCACCAAACAAGUCUUUGGCUUUGUUGUUGGCAAAGCCAUUAGGCCAAGCCAAGGCUGGUCGAAAAA (((((------------..(((---(................)))-).)))))............(((((((((.....)))))))))...(((((.((....)))))))...... ( -34.69) >DroEre_CAF1 5616 98 - 1 GUGGG------------UUGGG---CCUUUGUUGUUUUCUUAGGC-CUCGCACCAAACAAAACUUCGGCUUUGUUGUUGGCAAAGCCAUUAGGCCAAGUCAAGGCUGGCC--AAAA .((((------------(.(((---(((..(.......)..))))-)).)).)))...........((((((((.....))))))))....(((((.((....)))))))--.... ( -38.80) >DroWil_CAF1 5758 83 - 1 CUCUG------------UCCUCCUUCUUUCUCUGUUUUCAUAGGC--UCACAUUGAA---------AG------UGUUGGCAUAGCCAUUAGGC--AAUCAAGGCUAGACC-A-AA .((((------------.(((..........((((....))))((--(.((((....---------.)------))).)))...(((....)))--.....))).))))..-.-.. ( -15.90) >DroYak_CAF1 5373 98 - 1 GUGUG------------UUGGG---CCUUUGUUGUUUUCUUAGGC-CUCGCACCAAACAAAACUUCGGCUUUGUUGUUGGCAAAGCCAUUAGGCCGAGCCAAGGCUGGCC--AAAA (.(((------------(.(((---(((..(.......)..))))-)).)))))............((((((((.....))))))))....((((.(((....)))))))--.... ( -41.00) >DroAna_CAF1 5697 97 - 1 GAGUGUGACUAUGUACGUGUGG---CUUUUGUUGUUUUCUUAGGC-CUCGAACCGAA---------AGUUUUGUUGUUGGCAAAGCCAUUAGGC---GCCAAGGCUGUCC--A-AA ...((.(((...((.....(((---(.................((-(.((((.(...---------.).)))).....)))...(((....)))---))))..)).))))--)-.. ( -23.10) >DroPer_CAF1 4270 96 - 1 GCCCGUU-GUGUGGGUGGGUGG---CUUUUGUUGUUUUCUUAGGCCCUCGCACAGAA---------AGUUUUGCUGUUGGCGAAGCCAUUAGGC--AGCCAAGGCUGUCC--G--- (((((..-...)))))(((..(---((((.(((((((.....(((..((((((((..---------.......))))..)))).)))...))))--))).)))))..)))--.--- ( -36.90) >consensus GUGUG____________UUGGG___CCUUUGUUGUUUUCUUAGGC_CUCGCACCAAA_________AGCUUUGUUGUUGGCAAAGCCAUUAGGC__AGCCAAGGCUGGCC__A_AA ..................................................................((((......(((((...(((....)))...))))))))).......... ( -9.94 = -9.80 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:37 2006