Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,562,634 – 4,562,729 |
Length | 95 |
Max. P | 0.714517 |
Location | 4,562,634 – 4,562,729 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.95 |
Mean single sequence MFE | -39.17 |
Consensus MFE | -22.03 |
Energy contribution | -22.03 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.20 |
Mean z-score | -1.90 |
Structure conservation index | 0.56 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4562634 95 - 20766785 GGGCCGGAUUCGGACUGGGCCUGGCCCUGCUCAUCCUGGUGGCCUACAUCACCGACUACUCACUCAUCCUGAUGGUGAGUGGCAGGCCC---CCCUAA------- (((((((((..((...((((...))))..)).)))).(((((......)))))(.((((((((.(((....)))))))))))).)))))---......------- ( -41.30) >DroVir_CAF1 714 101 - 1 GCGCCGGCUUCGGUCUGGGCCUGGCGCUGCUCAUCCUGGUCGCCUACAUAACCGACUAUUCGCUCAUACUGAUGGUGAGUAGCCAGCUG---GCCGGGAUA-GCA ((((((((((......))))).))))).(((.(((((((((((...(......).((((((((.(((....)))))))))))...)).)---)))))))))-)). ( -44.90) >DroGri_CAF1 1228 102 - 1 GCGCCGGCUUUGGCCUGGGCCUGGCCCUGCUCAUCCUGGUCGCCUACAUAACCGACUACUCGCUCAUACUGAUGGUGAGUGUAAAUGUG---UACCGGAUGGGCA .....((((..(((....))).))))..((((((((.(((.....(((((....((.((((((.(((....)))))))))))...))))---)))))))))))). ( -41.10) >DroEre_CAF1 998 98 - 1 GGGCCGGAUUUGGACUGGGCCUGGCCCUGCUCAUCCUGGUGGCCUACAUCACCGACUACUCACUCAUCCUGAUGGUGAGUGGCAGGCCCUAACCCGAU------- ((((((((..((..(.((((...)))).)..))))).(((((......)))))(.((((((((.(((....)))))))))))).))))).........------- ( -41.80) >DroYak_CAF1 1109 91 - 1 GAGCCGGAUUCGGACUGGGUCUGGCCCUGCUCAUCCUGGUGGCCUACAUCACCGACUACUCACUCAUCCUGAUGGUGAGUGGCGGGCCC-------AG------- ...(((....))).((((((..((((((.........)).)))).......(((.((((((((.(((....))))))))))))))))))-------))------- ( -38.40) >DroAna_CAF1 922 98 - 1 GCGCCGGAUUCGGUCUCGGUUUGGCCCUUCUCAUCCUGGUGGCCUACAUCACCGACUACUCGCUCAUCCUCAUGGUAAGUGGCCGUCUCGAAACCAAU------- ...........(((.((((..((((((((..(((...(((((......)))))((....))..........)))..))).)))))..)))).)))...------- ( -27.50) >consensus GCGCCGGAUUCGGACUGGGCCUGGCCCUGCUCAUCCUGGUGGCCUACAUCACCGACUACUCACUCAUCCUGAUGGUGAGUGGCAGGCCC___CCCGAG_______ ..(((((.(((.....))).)))))...........((((((......)))))).((((((((.(((....)))))))))))....................... (-22.03 = -22.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:36 2006