Locus 1144

Sequence ID 2R_DroMel_CAF1
Location 4,560,785 – 4,560,877
Length 92
Max. P 0.670744
window2013

overview

Window 3

Location 4,560,785 – 4,560,877
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 83.86
Mean single sequence MFE -26.77
Consensus MFE -19.97
Energy contribution -22.40
Covariance contribution 2.43
Combinations/Pair 1.03
Mean z-score -2.05
Structure conservation index 0.75
SVM decision value 0.29
SVM RNA-class probability 0.670744
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4560785 92 + 20766785
CAUAAAAGGGAAACAAGUGGC---ACACUAAAUUUUAUGAGCUCUGCGCCACCCUGCAGAUUCCUCCGCACCACCGGCGGGAGCAGGAGCACC------AC
(((((((.(....).((((..---.))))...))))))).(((((((((......))...((((.(((......))).))))))).))))...------.. ( -26.40)
>DroPse_CAF1 34169 77 + 1
CAUAAAAGGCAAACAAGUGGCCCAACACUAAAUUUCAUGAGCUGAGCGUCCCC----AGAAGCAGCUCCACCA---GU---------AG--CC------AC
.......(((.....((((......)))).........((((((....((...----.))..)))))).....---..---------.)--))------.. ( -19.00)
>DroSec_CAF1 34022 92 + 1
CAUAAAAGAGAAACAAGUGGC---ACACUAAAUUUUAUGCGCUCUGCGCCACCCUGCAGAUUCCUCUGCACCACCGGCGGGAGCAGGAGCACC------AC
(((((((........((((..---.))))...))))))).(((((((.((..((((((((....)))))).....))..)).))).))))...------.. ( -26.20)
>DroSim_CAF1 34688 92 + 1
CAUAAAAGGGAAACAAGUGGC---ACACUAAAUUUUAUGAGCUCUGCGCCACCCUGCAGAUUCCUCUGCACCACCGGCGGGAGCAGGAGCACC------AC
(((((((.(....).((((..---.))))...))))))).(((((((.((..((((((((....)))))).....))..)).))).))))...------.. ( -30.20)
>DroEre_CAF1 34558 92 + 1
CAUAAAAGGGAAACAAGUGGC---ACACUAAAUUUUAUGAGCUCUGCGCCACCCUGCAGAUUCAUCUGCACCACCAGCGGGAGCAGGAGCACC------AC
(((((((.(....).((((..---.))))...))))))).(((((..((..(((((((((....))))))........))).)).)))))...------.. ( -27.00)
>DroYak_CAF1 34502 98 + 1
CAUAAAAGGGAAACAAGUGGC---ACACUAAAUUUUAUGAGCUCUGUGCCACCCUGCAGAUUCUUCUGCACCACCGGCGGGAGCAGGAGCACCAGCACCAU
(((((((.(....).((((..---.))))...))))))).(((((.((((....((((((....)))))).....))))))))).((.((....)).)).. ( -31.80)
>consensus
CAUAAAAGGGAAACAAGUGGC___ACACUAAAUUUUAUGAGCUCUGCGCCACCCUGCAGAUUCCUCUGCACCACCGGCGGGAGCAGGAGCACC______AC
(((((((.(....).((((......))))...))))))).(((((((.((..((((((((....)))))).....))..)).))).))))........... (-19.97 = -22.40 +   2.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:34 2006