Locus 1141

Sequence ID 2R_DroMel_CAF1
Location 4,550,311 – 4,550,418
Length 107
Max. P 0.861112
window2007

overview

Window 7

Location 4,550,311 – 4,550,418
Length 107
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 92.49
Mean single sequence MFE -38.78
Consensus MFE -35.20
Energy contribution -35.40
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.91
SVM decision value 0.83
SVM RNA-class probability 0.861112
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4550311 107 + 20766785
GCGGAGUCGCCACCGCAAUUUGGCGCAAUUAGCAGCAGGCAGACUUGCAGAUCGGCUGCCUUGCCAGCUGACAAAAAAAAGCAGGCGGCACGCAAUGCAUUCGCCC--------A
(((((((((((..(((......)))......((.(((((....)))))...(((((((......))))))).........)).))))))..((...)).)))))..--------. ( -37.20)
>DroSec_CAF1 23663 115 + 1
GCGGAGUCGCCACCGCAAUUUGGCGCAAUUAGCAGCAGGCAGACUUGCAGAUCGGCUGCCUCGCCAGCUGACAAAAAAUAGCAGGCGGCACGCAAUGCAUUCGCCCAUUCGCCUA
((((........)))).....(((((.....))....(((.((..((((...(((((((((.....((((........))))))))))).))...)))).))))).....))).. ( -38.60)
>DroSim_CAF1 23810 115 + 1
GCGGAGUCGCCACCGCAAUUUGGCGCAAUUAGCAGCAGGCAGACUUGCAGAUCGGCUGCCUGGCCAGCUGACAAAAAAUAGCAGGCGGCACGCAAUGCAUUCGCCCAUUCGCCCA
(((((((((((.........((((((.....))..(((((((.((........)))))))))))))((((........)))).)))))).......((....))...)))))... ( -40.90)
>DroEre_CAF1 23992 107 + 1
GCGGAGUCGCCACCGCAAUUUGGCGCAAUUAGCAGCAGGCAGACUUGCAGAUCGCCUGCCUCGCCAGCUGACAAAAAAAAGCAGGCGGCACGCAAUGCAUUCG--------CCCA
(((((((((((.........((((((.....)).((((((.((........))))))))...))))(((..........))).))))))..((...)).))))--------)... ( -38.50)
>DroYak_CAF1 23894 113 + 1
GCGGAGUCGCCACCGCAAUUUGGCGCAAUUAGCAGCAGGCAGACUUACAGAUCGGCUGCCUCGCCAGCUGACAAA--AAAGCAGGCGGCACGCAAUGCAUUCGCCCAUUCGCCCA
(((((((((((.........((((((.....)).(.((((((.((........)))))))))))))(((......--..))).)))))).......((....))...)))))... ( -38.70)
>consensus
GCGGAGUCGCCACCGCAAUUUGGCGCAAUUAGCAGCAGGCAGACUUGCAGAUCGGCUGCCUCGCCAGCUGACAAAAAAAAGCAGGCGGCACGCAAUGCAUUCGCCCAUUCGCCCA
(((..((((((..(((......)))...(((((.((((((((.((........)))))))).))..)))))............)))))).)))...................... (-35.20 = -35.40 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:29 2006