Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,541,530 – 4,541,620 |
Length | 90 |
Max. P | 0.671911 |
Location | 4,541,530 – 4,541,620 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 89.22 |
Mean single sequence MFE | -26.66 |
Consensus MFE | -19.46 |
Energy contribution | -20.86 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.15 |
Mean z-score | -1.87 |
Structure conservation index | 0.73 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4541530 90 - 20766785 GCCAGAAUCCGGUGUACUAUGUUUUUAAUUGCUCUUGCUGCAUGCAAGUGUAAUUUGGGGCACAGCUGGGUGGCAAAACAGGAAAAUUUC ((((...((((((......(((((..((((((.(((((.....))))).))))))..)))))..))))))))))................ ( -28.80) >DroSec_CAF1 15109 89 - 1 GCUAGAAUCCGGUGUGCUUUGGUUUUAAUUGCUCUUGCUGCAUGCAAGUGUAAUUUGGGGCACAGCUGGGUGGCAAAACAGGAAAAU-UC (((...(((((((((((((..(.....(((((.(((((.....))))).))))))..))))))).))))))))).............-.. ( -32.10) >DroSim_CAF1 15122 90 - 1 GCUAGAAUCCGGUGUGCUUUGGUUUUAAUUGCUCUUGCUGCAUGCAAGUGUAAUUUGGGGCACAGCUGGGUGGCAAAACAGGAAAAUUUC (((...(((((((((((((..(.....(((((.(((((.....))))).))))))..))))))).)))))))))................ ( -32.10) >DroEre_CAF1 14803 89 - 1 GCUAGAAUCCGGUGUGGUGUGAUUGUAGUUGCUCUUGCUGCAUGCGAAUAUAAUUUGGGGCACAGCUGGGAAACA-AACAGGAAAGUUUU .......((((((...(((((((((((.((((...........)))).)))))))....)))).)))))).....-.............. ( -19.20) >DroYak_CAF1 14915 90 - 1 GCUAGAAUCCGGUGUAAUAUGGUUUUAGUUGCUCUUACUGCAUGCAAAUGUAAUUUGGGGCACAGCUGGCUAGCAAAACAGGAAAAUUUA (((((...(((((.(((.......)))((.(((((...(((((....)))))....))))))).))))))))))................ ( -21.10) >consensus GCUAGAAUCCGGUGUGCUAUGGUUUUAAUUGCUCUUGCUGCAUGCAAGUGUAAUUUGGGGCACAGCUGGGUGGCAAAACAGGAAAAUUUC ((((...(((((((((((........((((((.(((((.....))))).))))))...)))))).)))))))))................ (-19.46 = -20.86 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:28 2006