| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,538,099 – 4,538,209 |
| Length | 110 |
| Max. P | 0.904413 |
| Location | 4,538,099 – 4,538,209 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 92.69 |
| Mean single sequence MFE | -29.58 |
| Consensus MFE | -22.32 |
| Energy contribution | -23.20 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.904413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4538099 110 + 20766785 AAUGGCUAAUGCCAUUGGAUGACAAUGGUAAUGGCUGCAGCCGCAACAUGGCCAACAACAUUUGCAACAUAGGCAACAUCUUCAACAAUGGCAACACAAAAGCUCAGCCA .........((((((((.....)))))))).((((((.(((.((((.(((........)))))))......(....)...........((....)).....))))))))) ( -31.70) >DroSec_CAF1 11721 108 + 1 -AUGGCUAAUGCCC-CGGAUGACAAUGGUAAUGGCUGCGGCCGCAACAUGGCCAACAAAAUCUGCAACAUAGGCAACAUCUUCAACAAUGGCAACACAAAAGCUCAGCCA -.(((((..((((.-(((((.....((((.(((..(((....))).))).)))).....))))).......)))).............((....)).........))))) ( -26.50) >DroSim_CAF1 11739 109 + 1 AAUGGCUAAUGCCC-CGGAUGACAAUGGUAAUGGCUGCAGCCGCAACAUGGCCAACAACAUCUGCAACAUAGGCAACAUCUUCAACAAUGGCAACACAAAAGCUCAGCCA ..(((((..((((.-((((((....((((.(((..(((....))).))).))))....)))))).......)))).............((....)).........))))) ( -27.90) >DroEre_CAF1 11487 109 + 1 AAUGGCUAAUGCCC-CGGAUGACAAUGGUAAUGGCUGCAGCCGCAGCAUGGCCAACAACAUCUGCAACAGCGGCAACAUCUUCCACAAUGGCAACACAAAAGCUCAGCCA ..(((((..((((.-.(((((....((((....(((((....)))))...))))....)))))((....)))))).............((....)).........))))) ( -34.00) >DroYak_CAF1 11503 103 + 1 AAUGGCUAAUGCCC-CGGAUGACAAUGGUAAUGGCUGCAGCCGCAGC------AACAUCAUCUGCAACAUCGGCAACAUCUUCAACAAUGGCAACACAAAAGCGCAGCCA ...(((....)))(-((........)))...(((((((.((((..((------(........))).....))))..............((....)).......))))))) ( -27.80) >consensus AAUGGCUAAUGCCC_CGGAUGACAAUGGUAAUGGCUGCAGCCGCAACAUGGCCAACAACAUCUGCAACAUAGGCAACAUCUUCAACAAUGGCAACACAAAAGCUCAGCCA ..(((((..((((..((((((....((((.(((..(((....))).))).))))....)))))).......)))).............((....)).........))))) (-22.32 = -23.20 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:24 2006