Locus 1135

Sequence ID 2R_DroMel_CAF1
Location 4,534,399 – 4,534,513
Length 114
Max. P 0.517474
window2000

overview

Window 0

Location 4,534,399 – 4,534,513
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 75.28
Mean single sequence MFE -43.82
Consensus MFE -22.42
Energy contribution -22.03
Covariance contribution -0.38
Combinations/Pair 1.27
Mean z-score -1.65
Structure conservation index 0.51
SVM decision value -0.03
SVM RNA-class probability 0.517474
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4534399 114 + 20766785
CGACUGGUGUUCUCCGGCUCGGCGUACUCCAGCUUGUCCGUGGAGCUGGCGGCGGCCAUAAGAUCGCUGCGUUCGGUUCGCUCGGGACCCAGUUCCAAUGCCAGCGGUGGCUGC
(((((((......)))).)))(((..(.((.(((.((...((((((((((((((..(....)..))))))....(((((.....)))))))))))))..)).))))).)..))) ( -47.30)
>DroVir_CAF1 9284 111 + 1
CGGCUGGUAUGCUCCGGCUCCGCAUACUCCAGCUUGUCCGUGGAGCUGGCCGCAGCCACCAAAUCGCUGCGCUCGGUGCGUUCCGGUGGGGUUUGCU--GUU-GUUGUUGCUGC
((((.(((.(((.((((((((((..((........))..))))))))))..))))))(((..((((..((((.....))))..))))..)))..)))--)..-........... ( -44.50)
>DroPse_CAF1 8034 108 + 1
CGACUGGUAUUCUCCGGCUCCGCGUACUCCAGCUUGUCCGUGGAGCUGGCAGAGGCCACCAGAUCGCUGCGUUCCGUUCGUUCUGGCUCUAGUUCCA------GCGGCUGCUGC
.(((((((.(((((((((((((((.((........)).))))))))))).))))...))))).))((.(((..(((((.(..(((....)))..).)------)))).))).)) ( -46.90)
>DroGri_CAF1 9064 105 + 1
CGACUCGUAUUCUCCGGCUCAGCAUAUUCCAGCUUGUCUGUCGAGCUGGCUGCAGCGACCAGAUCACUACGCUCCGUGCGUUCCGGUUGCAUUUGCU--GCA-------GCUGC
..............((((((((((....((((((((.....)))))))).....((((((.((.....((((.....)))))).))))))...))))--).)-------)))). ( -40.70)
>DroAna_CAF1 9439 103 + 1
CGACUAGUGUUUUCCGGCUCAGCGUACUCCAGCUUGUCCGUAGAGCUGGCAGCAGCCAUCAAAUCGCUGCGUUCAGUCCGCUCCGGAUCACGCCCCACCUCCA-----------
......((((..(((((...((((.((((((((((.......)))))))..(((((.........)))))....))).)))))))))..))))..........----------- ( -36.60)
>DroPer_CAF1 8262 108 + 1
CGACUGGUAUUCUCCGGCUCCGCGUACUCCAGCUUGUCCGUGGAGCUGGCAGAGGCCACCAGAUCGCUGCGUUCCGUUCGUUCUGGCUCUAGUUCCA------GCGGCUGCUGC
.(((((((.(((((((((((((((.((........)).))))))))))).))))...))))).))((.(((..(((((.(..(((....)))..).)------)))).))).)) ( -46.90)
>consensus
CGACUGGUAUUCUCCGGCUCCGCGUACUCCAGCUUGUCCGUGGAGCUGGCAGCAGCCACCAGAUCGCUGCGUUCCGUUCGUUCCGGAUCCAGUUCCA__GC__GCGG_UGCUGC
....((((.....(((((((.(((.((........)).))).))))))).....)))).....(((..(((.......)))..)))............................ (-22.42 = -22.03 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:22 2006