Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,533,133 – 4,533,253 |
Length | 120 |
Max. P | 0.505004 |
Location | 4,533,133 – 4,533,253 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.44 |
Mean single sequence MFE | -47.47 |
Consensus MFE | -35.65 |
Energy contribution | -35.43 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.30 |
Mean z-score | -1.70 |
Structure conservation index | 0.75 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4533133 120 - 20766785 CGAGUUCUUCCUGGGCUGCUGGCUCUCCGGCGGCCUCAUUCAGGGCACCUGCGACGGACUGCUGCGCGGCUGUUGCCACCGCACGGCCAAGUCGGCCAAUCUUGGCAGCUCGGACUUCGU (((((((.....((((((((((....))))))))))......((((.....((((((.(((.((((.(((....)))..)))))))))..))))((((....)))).)))))))).))). ( -53.50) >DroVir_CAF1 7791 120 - 1 CGAGUUCUUUUUAGGCUGCUGGAUAUCCGGCGGCCUCAUACAGGGCACCUGCAAUGGAUUGCUGCGCGGCUGUUGCCAUCGCACGGCCAAAUCGGCCAAUUUGCGCAGCUCGGACUAUGU ..(((((.....((((((((((....))))))))))....((..((....))..))....((((((((((....))).......((((.....)))).....)))))))..))))).... ( -54.80) >DroGri_CAF1 7776 120 - 1 CGAGUUCUUUUUAGGCUGCUGGCUAUCCGGCGGCCUCAUACAAGGCACCUGCAAUGGAUUGCUGCGCGGCUGUUGCCAUCGCACCGCCAAAUCGGCAAAUUUACGAAGCUCGGACUAUAU ((((((......((((((((((....)))))))))).......(((....((((....))))((((.(((....)))..))))..)))...(((.........)))))))))........ ( -42.00) >DroWil_CAF1 9465 120 - 1 CGAAUUCUUUUUAGGCUGCUGGCUUAGCGGUGGCCUAAUACAAGGCACUUGCAAUGGAUUAUUACGCGGCUGUUGUCAUCGCACAGCAAAAUCAGCGAAUUUACGUAGCUCGGAUCAAAC .........((..((((((((((.((((.(((((((......)))).((......)).......))).))))..))))((((............))))......))))))..))...... ( -31.70) >DroMoj_CAF1 8396 120 - 1 CGAGUUCUUUUUAGGCUGCUGGCUAUCUGGCGGCCUAAUACAGGGCACCUGCAAUGGAUUGCUGCGCGGCUGUUGCCAUCGCACGGCCAAAUCGGCUAAUUUGCGCAGCUCGGACUAUGU ((((((((..(((((((((..(....)..)))))))))...))))).((......))...((((((((((....))).......((((.....)))).....))))))))))........ ( -50.90) >DroAna_CAF1 8174 120 - 1 CGAGUUCUUUUUGGGCUGCUGGCUGUCGGGCGGCCUCAUUCAGGGGACCUGCAACGGACUAUUGCGCGGCUGCUGCCACCGGACGGCCAAGUCGGCCAAUCUGGGCAGCUCGGACUUCGU (((((((((....((((((((((((((((((((((((.....)))).)).((((.......))))))(((....))).)).))))))).)).))))).....))).))))))........ ( -51.90) >consensus CGAGUUCUUUUUAGGCUGCUGGCUAUCCGGCGGCCUCAUACAGGGCACCUGCAAUGGAUUGCUGCGCGGCUGUUGCCAUCGCACGGCCAAAUCGGCCAAUUUGCGCAGCUCGGACUAUGU (((((((.....((((((((((....))))))))))....((((...))))....)))).(((((..(((....))).......((((.....)))).......))))))))........ (-35.65 = -35.43 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:21 2006