Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,530,057 – 4,530,166 |
Length | 109 |
Max. P | 0.544911 |
Location | 4,530,057 – 4,530,166 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 80.58 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -16.92 |
Energy contribution | -18.87 |
Covariance contribution | 1.95 |
Combinations/Pair | 1.23 |
Mean z-score | -1.93 |
Structure conservation index | 0.55 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4530057 109 - 20766785 AGCAGACUGACGCCCAUGUUGAUCAGCGACAGUCCGUACACAAUGGAGCUAAAGAUGGUCAACACUGUGGCCAAGUAAUCAUCAUUAGGUAA--UUCCAAGGUUAGUGCUU (((..((((((((((((((((((((.(...(((((((.....))))).))...).))))))))).)).)))................((...--..))...))))))))). ( -31.40) >DroSec_CAF1 3791 108 - 1 AGCAGACUGACGCCCAUGUUGAUCAGCGACAGUCCGUACACAAUGGAGCUAAAGAUGGUCAACACUGUGGCCAAGUAAUCAUCAUUAGGUAA--UC-CAAGGUUAGUGCUU (((..((((((((((((((((((((.(...(((((((.....))))).))...).))))))))).)).)))................((...--.)-)...))))))))). ( -31.40) >DroSim_CAF1 3784 109 - 1 AGCAGACUGACGCCCAUGUUGAUCAGCGACAGUCCGUACACAAUGGAGCUAAAGAUGGUCAACACUGUGGCCAAGUAAUCAUCAUUAGGUAA--UCCCAAGGUUAGUGAUU .....((((((((((((((((((((.(...(((((((.....))))).))...).))))))))).)).)))................((...--..))...)))))).... ( -29.70) >DroEre_CAF1 3753 107 - 1 AGCAGACUGACGCCCAUGUUGAUCAACGAGAGUCCGUACGCAAUGGAACUAAAGAUGGUCAACACUGG-GCCAAGUAAUCAUUACUAGAUG---UCCCAAGGUAAGGGCUC (((..((((((((((((((((((((.(...(((((((.....)))).)))...).))))))))).)))-))..((((.....))))....)---))....)))....))). ( -33.80) >DroYak_CAF1 3711 111 - 1 AGCAGACUGACGCCCAUGUUGAUCAGCGACAGUCCGUACACAAUGGAGCUAAAGAUGGUCAACACUGGGGUUAAGUAACCAUUCUUGGGUUAGUGCCUAAGGUUAGUGCUU (((..((((((.(((((((((((((.(...(((((((.....))))).))...).))))))))).))))..............(((((((....)))))))))))))))). ( -39.60) >DroAna_CAF1 5235 95 - 1 AGUAGGCUAACGCCCAAGUUGAUCAACGAAAGUCCAUAAGCUAUAGAGCUAAAGAUUCCCAAUACU----------AAUCAGGAAUCAGUAA-----CAAGAAUUUUU-UA ....(((....)))...((((....((....)).....((((....))))...((((((..((...----------.))..))))))..)))-----)..........-.. ( -18.30) >consensus AGCAGACUGACGCCCAUGUUGAUCAGCGACAGUCCGUACACAAUGGAGCUAAAGAUGGUCAACACUGUGGCCAAGUAAUCAUCAUUAGGUAA__UCCCAAGGUUAGUGCUU .....((((((((((((((((((((.(...(((((((.....))))).))...).))))))))).)).)))......(((.......)))...........)))))).... (-16.92 = -18.87 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:19 2006