Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,523,372 – 4,523,480 |
Length | 108 |
Max. P | 0.981630 |
Location | 4,523,372 – 4,523,480 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 73.71 |
Mean single sequence MFE | -47.25 |
Consensus MFE | -26.37 |
Energy contribution | -25.73 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.20 |
Mean z-score | -2.23 |
Structure conservation index | 0.56 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4523372 108 + 20766785 CCACUGCGCCGCGACAAGGCGUCCAGGAUGAGCAUGUCGUGCUCCUGCUGGGCACUGGGAUAGCCCAGAGCAUCGGCUCUUCUGGGCGCUGACAAACAUAUCAGGGCA .....(((((.......)))))((((((.((((((...))))))..(((((((.(((((....))))).)).)))))..))))))((.((((........)))).)). ( -46.30) >DroPse_CAF1 72024 90 + 1 CCGCUGCGGCGGGAGAGGGCGUCCAGGAUGAGCAUGUCGUGCUCCUGCUGGGCACUCGGAUAGCCGAGGCCGGAGAC------------------GCCGGCCAGGGCA ((((....))))....(((.((((((.(.((((((...)))))).).)))))).))).....(((..((((((....------------------.))))))..))). ( -48.10) >DroEre_CAF1 56943 108 + 1 CCACUGCGCCGCGACAGGGCGUCCAGGAUGAGCAUGUCGUGCUCCUGCUGGGCACUGGGAUAGCCCAGAGCAUCUGCACUUCUGGGAGCAGACAAACAUAUCAGGGCA ((..((((((.(....))))((((((.(.((((((...)))))).).)))))).(((((....))))).)))(((((.((....)).)))))...........))... ( -43.00) >DroYak_CAF1 59780 108 + 1 CCACUGCGCCGCGACAAGGCGUCCAGGAUGAGCAUGUCGUGCUCCUGCUGGGCACUGGGAUAGCCCAGAGCCUCAGCUCUUCUGGGAGCUGACAGAGAUAUCAGUGCA .....((((........(((((((((.(.((((((...)))))).).)))))).(((((....))))).)))((((((((....))))))))...........)))). ( -49.20) >DroMoj_CAF1 74267 96 + 1 CCGCUGCGCCGUGACAGCGCAUCCAGUAUGAGCAUGUCGUGCUCCUGCUGAGCUGUCGGAUAGCCCACGGCGCAGACGCUGUUGGGCGU------------GAGCACA .(((((((((((((((((.....(((((.((((((...)))))).))))).))))))((.....))))))))))).)).......((..------------..))... ( -48.60) >DroPer_CAF1 75364 90 + 1 CCGCUGCGGCGGGAGAGGGCGUCCAGGAUGAGCAUGUCGUGCUCCUGCUGGGCACUCGGAUAGCCGAGGCCGGAGAC------------------CCCGGCCAGGGCA ((((....))))....(((.((((((.(.((((((...)))))).).)))))).))).....(((..((((((....------------------.))))))..))). ( -48.30) >consensus CCACUGCGCCGCGACAGGGCGUCCAGGAUGAGCAUGUCGUGCUCCUGCUGGGCACUCGGAUAGCCCAGAGCGUAGAC_CUUCUGGG_GC______ACAUAUCAGGGCA ..........((........((((((.(.((((((...)))))).).)))))).(((((....))))).))..................................... (-26.37 = -25.73 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:18 2006