Locus 113

Sequence ID 2R_DroMel_CAF1
Location 1,363,878 – 1,363,974
Length 96
Max. P 0.728960
window244

overview

Window 4

Location 1,363,878 – 1,363,974
Length 96
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 88.67
Mean single sequence MFE -19.20
Consensus MFE -18.75
Energy contribution -18.53
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.16
Structure conservation index 0.98
SVM decision value 0.42
SVM RNA-class probability 0.728960
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1363878 96 - 20766785
UCUGGCAUGCGGCUUCUCAUAUUGAAAUUGCAUGCAAACAAUUUUGAAAUUGAAGCUACGUUUCUGAAAUUGCACCACGC-UCCCCUGCCCAUCAUC---------
...((((((..(((((.....(..((((((........))))))..)....)))))..)))..........((.....))-......))).......--------- ( -19.60)
>DroEre_CAF1 456 106 - 1
UCUGGCAUGCGGCUUCUCAUAUUGAAAUUGCAUGCAAACAAUUUUGAAAUUGAAGUUACGUUUCUGAAAUUGCACCACGCCUCCUCUGCCCCCCUCCCUCCUCCCU
....((((((((.(((.......))).))))))))...((((((((((((.........))))).))))))).................................. ( -18.40)
>DroYak_CAF1 160 97 - 1
UCUGGCAUGCGGCUUCUCAUAUUGAAAUUGCAUGCAAACAAUUUUGAAAUUGAAGCUACGUUUCUGAAAUUGCACCACGCUUCCUUUGCCCCUCAUC---------
...((((((..(((((.....(..((((((........))))))..)....)))))..)))..........((.....)).......))).......--------- ( -19.60)
>consensus
UCUGGCAUGCGGCUUCUCAUAUUGAAAUUGCAUGCAAACAAUUUUGAAAUUGAAGCUACGUUUCUGAAAUUGCACCACGC_UCCUCUGCCCCUCAUC_________
...((((((..(((((.....(..((((((........))))))..)....)))))..)))..........((.....)).......)))................ (-18.75 = -18.53 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:42 2006