Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,522,258 – 4,522,356 |
Length | 98 |
Max. P | 0.500000 |
Location | 4,522,258 – 4,522,356 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 85.27 |
Mean single sequence MFE | -20.71 |
Consensus MFE | -11.88 |
Energy contribution | -13.88 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.82 |
Structure conservation index | 0.57 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4522258 98 + 20766785 AGAACUUUCCCACAAUUGUGUUCUCACCCAAAAAGAAAAUAAUUUCAGAAAAAGGCUUAGAAGGGUGAGAAAGCAGUUAUCAUACUCAUGAUGAAAGU ...((((((....((((((.(((((((((.....((((....))))((.......)).....))))))))).))))))(((((....))))))))))) ( -26.80) >DroSec_CAF1 56711 96 + 1 ACAACUUUCCCACAAUUGUGUUCUCACCCAAAA--AAAAUAAUAUCAGAAAAAUUCCGAGAAGGGUCAGAAAGCAGUUAUCAUACUCAUGAUGAAAGU ...((((((....((((((.((((.((((....--...........................)))).)))).))))))(((((....))))))))))) ( -18.88) >DroSim_CAF1 55629 85 + 1 AGAACUUUCCCGCAAUUGUGUUCUCACCCAAA----AAAUAAUAUCAGGAAAAGGCCGAG---------AAAGCAGUUAUCAUACUCAUGAUGAAAGU ...((((((....((((((.(((((..((...----.................))..)))---------)).))))))(((((....))))))))))) ( -16.45) >consensus AGAACUUUCCCACAAUUGUGUUCUCACCCAAAA__AAAAUAAUAUCAGAAAAAGGCCGAGAAGGGU_AGAAAGCAGUUAUCAUACUCAUGAUGAAAGU ...((((((....((((((.((((.((((.................................)))).)))).))))))(((((....))))))))))) (-11.88 = -13.88 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:15 2006